Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_00130

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_00120 and AO356_00125 are separated by 43 nucleotidesAO356_00125 and AO356_00130 are separated by 208 nucleotidesAO356_00130 and AO356_00135 are separated by 899 nucleotides AO356_00120: AO356_00120 - DNA topoisomerase III, at 22,824 to 24,791 _00120 AO356_00125: AO356_00125 - hypothetical protein, at 24,835 to 25,092 _00125 AO356_00130: AO356_00130 - XRE family transcriptional regulator, at 25,301 to 25,642 _00130 AO356_00135: AO356_00135 - hypothetical protein, at 26,542 to 27,123 _00135 Position (kb) 25 26Strain fitness (log2 ratio) -2 -1 0 1 2 3at 24.452 kb on - strand, within AO356_00120at 24.455 kb on - strand, within AO356_00120at 24.635 kb on + strandat 24.635 kb on + strandat 24.635 kb on + strandat 24.635 kb on + strandat 24.636 kb on - strandat 24.636 kb on - strandat 24.636 kb on - strandat 24.640 kb on + strandat 24.738 kb on + strandat 24.749 kb on + strandat 24.750 kb on - strandat 24.750 kb on - strandat 24.810 kb on + strandat 24.810 kb on + strandat 24.811 kb on - strandat 24.829 kb on + strandat 24.830 kb on - strandat 24.830 kb on - strandat 24.830 kb on - strandat 24.830 kb on - strandat 24.877 kb on + strand, within AO356_00125at 24.878 kb on - strand, within AO356_00125at 24.925 kb on + strand, within AO356_00125at 24.925 kb on + strand, within AO356_00125at 25.186 kb on + strandat 25.186 kb on + strandat 25.186 kb on + strandat 25.186 kb on + strandat 25.187 kb on - strandat 25.187 kb on - strandat 25.194 kb on + strandat 25.194 kb on + strandat 25.194 kb on + strandat 25.195 kb on - strandat 25.195 kb on - strandat 25.208 kb on + strandat 25.209 kb on - strandat 25.209 kb on - strandat 25.309 kb on + strandat 25.309 kb on + strandat 25.310 kb on - strandat 25.310 kb on - strandat 25.310 kb on - strandat 25.366 kb on + strand, within AO356_00130at 25.367 kb on - strand, within AO356_00130at 25.474 kb on - strand, within AO356_00130at 25.481 kb on - strand, within AO356_00130at 25.646 kb on + strandat 25.646 kb on + strandat 25.646 kb on + strandat 25.646 kb on + strandat 25.646 kb on + strandat 25.646 kb on + strandat 25.719 kb on + strandat 25.719 kb on + strandat 25.719 kb on + strandat 25.720 kb on - strandat 25.720 kb on - strandat 25.908 kb on + strandat 25.908 kb on + strandat 26.066 kb on + strandat 26.066 kb on + strandat 26.066 kb on + strandat 26.066 kb on + strandat 26.066 kb on + strandat 26.066 kb on + strandat 26.066 kb on + strandat 26.067 kb on - strandat 26.067 kb on - strandat 26.067 kb on - strandat 26.067 kb on - strandat 26.067 kb on - strandat 26.067 kb on - strandat 26.067 kb on - strandat 26.067 kb on - strandat 26.081 kb on - strandat 26.133 kb on - strandat 26.144 kb on + strandat 26.144 kb on + strandat 26.145 kb on - strandat 26.155 kb on + strandat 26.190 kb on - strandat 26.200 kb on + strandat 26.200 kb on + strandat 26.201 kb on - strandat 26.201 kb on - strandat 26.202 kb on + strandat 26.202 kb on + strandat 26.203 kb on - strandat 26.203 kb on - strandat 26.203 kb on - strandat 26.203 kb on - strandat 26.203 kb on - strandat 26.244 kb on + strandat 26.244 kb on + strandat 26.264 kb on - strandat 26.347 kb on - strandat 26.347 kb on - strandat 26.349 kb on + strandat 26.350 kb on - strandat 26.578 kb on + strandat 26.578 kb on + strandat 26.578 kb on + strandat 26.630 kb on + strand, within AO356_00135at 26.631 kb on - strand, within AO356_00135at 26.631 kb on - strand, within AO356_00135

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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24,452 - AO356_00120 0.83 -1.5
24,455 - AO356_00120 0.83 -1.0
24,635 + -0.3
24,635 + -0.5
24,635 + -0.7
24,635 + -0.4
24,636 - -0.5
24,636 - -0.2
24,636 - +0.8
24,640 + +0.4
24,738 + -0.2
24,749 + -1.1
24,750 - +0.2
24,750 - +0.5
24,810 + +0.7
24,810 + -0.6
24,811 - +0.0
24,829 + -0.1
24,830 - +0.1
24,830 - -0.6
24,830 - -0.5
24,830 - +1.2
24,877 + AO356_00125 0.16 +0.3
24,878 - AO356_00125 0.17 +1.4
24,925 + AO356_00125 0.35 +0.6
24,925 + AO356_00125 0.35 -0.5
25,186 + -1.5
25,186 + -0.0
25,186 + -0.9
25,186 + +0.4
25,187 - +0.1
25,187 - -0.5
25,194 + +1.5
25,194 + -0.2
25,194 + -0.8
25,195 - +0.4
25,195 - +1.5
25,208 + +0.1
25,209 - +1.4
25,209 - +0.4
25,309 + -0.5
25,309 + +0.3
25,310 - +0.4
25,310 - +0.3
25,310 - +0.1
25,366 + AO356_00130 0.19 +0.3
25,367 - AO356_00130 0.19 +0.7
25,474 - AO356_00130 0.51 +0.6
25,481 - AO356_00130 0.53 +0.9
25,646 + -0.3
25,646 + +0.1
25,646 + +0.2
25,646 + -1.0
25,646 + +0.7
25,646 + +0.7
25,719 + -0.1
25,719 + -0.2
25,719 + +1.0
25,720 - +0.7
25,720 - +1.2
25,908 + -0.2
25,908 + +0.1
26,066 + -0.2
26,066 + +0.2
26,066 + +0.1
26,066 + +0.1
26,066 + +0.1
26,066 + -1.0
26,066 + +3.2
26,067 - -0.7
26,067 - -0.1
26,067 - +0.7
26,067 - +1.9
26,067 - +1.0
26,067 - +0.4
26,067 - -0.1
26,067 - +1.1
26,081 - -0.6
26,133 - +0.3
26,144 + +0.3
26,144 + +0.3
26,145 - -1.5
26,155 + -0.0
26,190 - -0.7
26,200 + -2.7
26,200 + +0.9
26,201 - +0.9
26,201 - +0.1
26,202 + -0.4
26,202 + -1.1
26,203 - +1.1
26,203 - -0.4
26,203 - +0.9
26,203 - +0.7
26,203 - -0.7
26,244 + -0.4
26,244 + +0.2
26,264 - +1.2
26,347 - -1.2
26,347 - -1.1
26,349 + -0.7
26,350 - -0.6
26,578 + -1.0
26,578 + +0.4
26,578 + +0.3
26,630 + AO356_00135 0.15 +0.1
26,631 - AO356_00135 0.15 -0.1
26,631 - AO356_00135 0.15 +0.9

Or see this region's nucleotide sequence