Strain Fitness in Sinorhizobium meliloti 1021 around SMc04084

Experiment: Paraquat dichloride 0.05 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSMc04083 and SMc04084 are separated by 173 nucleotidesSMc04084 and SMc04085 are separated by 282 nucleotides SMc04083: SMc04083 - carbonic anhydrase, at 3,619,688 to 3,620,371 SMc04083 SMc04084: SMc04084 - pyridoxamine kinase, at 3,620,545 to 3,621,426 SMc04084 SMc04085: SMc04085 - hypothetical protein, at 3,621,709 to 3,626,496 SMc04085 Position (kb) 3620 3621 3622Strain fitness (log2 ratio) -1 0 1at 3619.689 kb on + strandat 3619.690 kb on - strandat 3620.531 kb on + strandat 3620.532 kb on - strandat 3620.546 kb on + strandat 3620.682 kb on - strand, within SMc04084at 3620.682 kb on - strand, within SMc04084at 3620.834 kb on + strand, within SMc04084at 3620.835 kb on - strand, within SMc04084at 3620.835 kb on - strand, within SMc04084at 3621.044 kb on + strand, within SMc04084at 3621.045 kb on - strand, within SMc04084at 3621.083 kb on + strand, within SMc04084at 3621.083 kb on + strand, within SMc04084at 3621.162 kb on - strand, within SMc04084at 3621.600 kb on - strandat 3621.958 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.05 mg/ml
remove
3,619,689 + +0.4
3,619,690 - -1.5
3,620,531 + +0.4
3,620,532 - -1.1
3,620,546 + -0.4
3,620,682 - SMc04084 0.16 -0.4
3,620,682 - SMc04084 0.16 +0.5
3,620,834 + SMc04084 0.33 -0.1
3,620,835 - SMc04084 0.33 +1.0
3,620,835 - SMc04084 0.33 -0.6
3,621,044 + SMc04084 0.57 -0.1
3,621,045 - SMc04084 0.57 -1.3
3,621,083 + SMc04084 0.61 -0.2
3,621,083 + SMc04084 0.61 +0.4
3,621,162 - SMc04084 0.70 -0.6
3,621,600 - -0.3
3,621,958 - -1.1

Or see this region's nucleotide sequence