Experiment: Paraquat dichloride 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03277 and SMc03278 are separated by 146 nucleotides SMc03278 and SMc03279 overlap by 4 nucleotides SMc03279 and SMc03280 are separated by 48 nucleotides SMc03280 and SMc03281 overlap by 131 nucleotides
SMc03277: SMc03277 - transport transmembrane protein, at 3,391,946 to 3,393,589
SMc03277
SMc03278: SMc03278 - transposase number 1 for insertion sequence ISRM28, at 3,393,736 to 3,394,194
SMc03278
SMc03279: SMc03279 - transposase number 2 for insertion sequence ISRM28, at 3,394,191 to 3,394,547
SMc03279
SMc03280: SMc03280 - transposase number 3 for insertion sequence ISRM28, at 3,394,596 to 3,395,336
SMc03280
SMc03281: SMc03281 - transposase, at 3,395,206 to 3,395,949
SMc03281
Position (kb)
3394
3395 Strain fitness (log2 ratio)
-2
-1
0
1 at 3393.270 kb on + strand, within SMc03277 at 3393.305 kb on - strand, within SMc03277 at 3393.433 kb on - strand at 3393.533 kb on - strand at 3393.533 kb on - strand at 3393.705 kb on + strand at 3393.705 kb on + strand at 3394.308 kb on + strand, within SMc03279 at 3394.391 kb on - strand, within SMc03279 at 3394.618 kb on + strand at 3394.619 kb on - strand at 3394.899 kb on + strand, within SMc03280 at 3394.899 kb on + strand, within SMc03280 at 3395.037 kb on + strand, within SMc03280 at 3395.038 kb on - strand, within SMc03280 at 3395.038 kb on - strand, within SMc03280 at 3395.115 kb on - strand, within SMc03280 at 3395.357 kb on + strand, within SMc03281 at 3395.358 kb on - strand, within SMc03281 at 3395.414 kb on + strand, within SMc03281 at 3395.415 kb on - strand, within SMc03281 at 3395.415 kb on - strand, within SMc03281 at 3395.415 kb on - strand, within SMc03281 at 3395.415 kb on - strand, within SMc03281 at 3395.415 kb on - strand, within SMc03281
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.05 mg/ml remove 3,393,270 + SMc03277 0.81 +0.2 3,393,305 - SMc03277 0.83 -0.3 3,393,433 - -1.5 3,393,533 - +0.3 3,393,533 - -0.7 3,393,705 + -0.1 3,393,705 + +0.2 3,394,308 + SMc03279 0.33 -0.6 3,394,391 - SMc03279 0.56 -0.8 3,394,618 + -0.0 3,394,619 - +0.8 3,394,899 + SMc03280 0.41 -0.1 3,394,899 + SMc03280 0.41 -0.7 3,395,037 + SMc03280 0.60 +0.1 3,395,038 - SMc03280 0.60 -0.3 3,395,038 - SMc03280 0.60 -0.5 3,395,115 - SMc03280 0.70 -1.8 3,395,357 + SMc03281 0.20 +1.2 3,395,358 - SMc03281 0.20 -1.4 3,395,414 + SMc03281 0.28 -0.1 3,395,415 - SMc03281 0.28 +0.2 3,395,415 - SMc03281 0.28 -0.0 3,395,415 - SMc03281 0.28 +0.6 3,395,415 - SMc03281 0.28 -0.7 3,395,415 - SMc03281 0.28 +0.0
Or see this region's nucleotide sequence