Experiment: Paraquat dichloride 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03168 and SMc03169 are separated by 305 nucleotides SMc03169 and SMc03170 are separated by 119 nucleotides
SMc03168: SMc03168 - multidrug efflux system protein, at 3,128,773 to 3,129,921
SMc03168
SMc03169: SMc03169 - transcriptional regulator, at 3,130,227 to 3,130,937
SMc03169
SMc03170: SMc03170 - transcriptional regulator, at 3,131,057 to 3,131,896
SMc03170
Position (kb)
3130
3131 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3129.322 kb on - strand, within SMc03168 at 3129.340 kb on + strand, within SMc03168 at 3129.341 kb on - strand, within SMc03168 at 3129.594 kb on - strand, within SMc03168 at 3129.671 kb on + strand, within SMc03168 at 3129.671 kb on + strand, within SMc03168 at 3129.672 kb on - strand, within SMc03168 at 3129.672 kb on - strand, within SMc03168 at 3129.672 kb on - strand, within SMc03168 at 3129.712 kb on + strand, within SMc03168 at 3129.712 kb on + strand, within SMc03168 at 3129.712 kb on + strand, within SMc03168 at 3129.712 kb on + strand, within SMc03168 at 3129.712 kb on + strand, within SMc03168 at 3129.712 kb on + strand, within SMc03168 at 3129.713 kb on - strand, within SMc03168 at 3129.713 kb on - strand, within SMc03168 at 3129.713 kb on - strand, within SMc03168 at 3129.713 kb on - strand, within SMc03168 at 3129.716 kb on + strand, within SMc03168 at 3129.716 kb on + strand, within SMc03168 at 3129.716 kb on + strand, within SMc03168 at 3129.717 kb on - strand, within SMc03168 at 3129.717 kb on - strand, within SMc03168 at 3129.717 kb on - strand, within SMc03168 at 3129.770 kb on + strand, within SMc03168 at 3129.923 kb on - strand at 3130.042 kb on - strand at 3130.042 kb on - strand at 3130.042 kb on - strand at 3130.060 kb on + strand at 3130.061 kb on - strand at 3130.213 kb on + strand at 3130.936 kb on - strand at 3130.970 kb on + strand at 3131.025 kb on + strand at 3131.025 kb on + strand at 3131.025 kb on + strand at 3131.026 kb on - strand at 3131.110 kb on + strand at 3131.112 kb on + strand at 3131.113 kb on - strand at 3131.113 kb on - strand at 3131.113 kb on - strand at 3131.113 kb on - strand at 3131.113 kb on - strand at 3131.113 kb on - strand at 3131.204 kb on + strand, within SMc03170 at 3131.204 kb on + strand, within SMc03170 at 3131.204 kb on + strand, within SMc03170 at 3131.204 kb on + strand, within SMc03170 at 3131.205 kb on - strand, within SMc03170 at 3131.205 kb on - strand, within SMc03170 at 3131.205 kb on - strand, within SMc03170 at 3131.205 kb on - strand, within SMc03170 at 3131.205 kb on - strand, within SMc03170 at 3131.205 kb on - strand, within SMc03170 at 3131.224 kb on - strand, within SMc03170 at 3131.292 kb on - strand, within SMc03170 at 3131.489 kb on + strand, within SMc03170 at 3131.489 kb on + strand, within SMc03170 at 3131.489 kb on + strand, within SMc03170 at 3131.489 kb on + strand, within SMc03170 at 3131.489 kb on + strand, within SMc03170 at 3131.489 kb on + strand, within SMc03170 at 3131.489 kb on + strand, within SMc03170 at 3131.489 kb on + strand, within SMc03170 at 3131.490 kb on - strand, within SMc03170 at 3131.490 kb on - strand, within SMc03170 at 3131.490 kb on - strand, within SMc03170 at 3131.543 kb on + strand, within SMc03170 at 3131.544 kb on - strand, within SMc03170 at 3131.544 kb on - strand, within SMc03170 at 3131.576 kb on - strand, within SMc03170 at 3131.627 kb on + strand, within SMc03170 at 3131.646 kb on + strand, within SMc03170 at 3131.647 kb on - strand, within SMc03170 at 3131.828 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.05 mg/ml remove 3,129,322 - SMc03168 0.48 +0.0 3,129,340 + SMc03168 0.49 -1.0 3,129,341 - SMc03168 0.49 -0.0 3,129,594 - SMc03168 0.71 +0.5 3,129,671 + SMc03168 0.78 -0.2 3,129,671 + SMc03168 0.78 +0.7 3,129,672 - SMc03168 0.78 +1.2 3,129,672 - SMc03168 0.78 +0.5 3,129,672 - SMc03168 0.78 +0.7 3,129,712 + SMc03168 0.82 -0.6 3,129,712 + SMc03168 0.82 -0.3 3,129,712 + SMc03168 0.82 +0.5 3,129,712 + SMc03168 0.82 -0.2 3,129,712 + SMc03168 0.82 +0.6 3,129,712 + SMc03168 0.82 +1.3 3,129,713 - SMc03168 0.82 -0.6 3,129,713 - SMc03168 0.82 +0.8 3,129,713 - SMc03168 0.82 -1.1 3,129,713 - SMc03168 0.82 -2.1 3,129,716 + SMc03168 0.82 +0.3 3,129,716 + SMc03168 0.82 -0.1 3,129,716 + SMc03168 0.82 -0.0 3,129,717 - SMc03168 0.82 +0.5 3,129,717 - SMc03168 0.82 -0.1 3,129,717 - SMc03168 0.82 -0.2 3,129,770 + SMc03168 0.87 +1.5 3,129,923 - -0.1 3,130,042 - +0.0 3,130,042 - +0.4 3,130,042 - +0.3 3,130,060 + +0.3 3,130,061 - +0.7 3,130,213 + -0.4 3,130,936 - -0.6 3,130,970 + +0.6 3,131,025 + -0.5 3,131,025 + +0.6 3,131,025 + -0.8 3,131,026 - -0.4 3,131,110 + +0.7 3,131,112 + +1.3 3,131,113 - +0.3 3,131,113 - -0.0 3,131,113 - +1.3 3,131,113 - -0.5 3,131,113 - -1.2 3,131,113 - +0.7 3,131,204 + SMc03170 0.17 -0.3 3,131,204 + SMc03170 0.17 +0.4 3,131,204 + SMc03170 0.17 -0.4 3,131,204 + SMc03170 0.17 +0.4 3,131,205 - SMc03170 0.18 -1.3 3,131,205 - SMc03170 0.18 -0.8 3,131,205 - SMc03170 0.18 +0.3 3,131,205 - SMc03170 0.18 +1.7 3,131,205 - SMc03170 0.18 +0.0 3,131,205 - SMc03170 0.18 -0.2 3,131,224 - SMc03170 0.20 -0.2 3,131,292 - SMc03170 0.28 +0.1 3,131,489 + SMc03170 0.51 -0.2 3,131,489 + SMc03170 0.51 +0.4 3,131,489 + SMc03170 0.51 -0.3 3,131,489 + SMc03170 0.51 -0.6 3,131,489 + SMc03170 0.51 -1.2 3,131,489 + SMc03170 0.51 +0.3 3,131,489 + SMc03170 0.51 +0.1 3,131,489 + SMc03170 0.51 +0.3 3,131,490 - SMc03170 0.52 +0.1 3,131,490 - SMc03170 0.52 -0.2 3,131,490 - SMc03170 0.52 +0.3 3,131,543 + SMc03170 0.58 -0.6 3,131,544 - SMc03170 0.58 -2.2 3,131,544 - SMc03170 0.58 +2.0 3,131,576 - SMc03170 0.62 +0.0 3,131,627 + SMc03170 0.68 +0.0 3,131,646 + SMc03170 0.70 -0.8 3,131,647 - SMc03170 0.70 +0.2 3,131,828 + +0.7
Or see this region's nucleotide sequence