Strain Fitness in Sinorhizobium meliloti 1021 around SMc03169

Experiment: Paraquat dichloride 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc03168 and SMc03169 are separated by 305 nucleotidesSMc03169 and SMc03170 are separated by 119 nucleotides SMc03168: SMc03168 - multidrug efflux system protein, at 3,128,773 to 3,129,921 SMc03168 SMc03169: SMc03169 - transcriptional regulator, at 3,130,227 to 3,130,937 SMc03169 SMc03170: SMc03170 - transcriptional regulator, at 3,131,057 to 3,131,896 SMc03170 Position (kb) 3130 3131Strain fitness (log2 ratio) -2 -1 0 1 2at 3129.322 kb on - strand, within SMc03168at 3129.340 kb on + strand, within SMc03168at 3129.341 kb on - strand, within SMc03168at 3129.594 kb on - strand, within SMc03168at 3129.671 kb on + strand, within SMc03168at 3129.671 kb on + strand, within SMc03168at 3129.672 kb on - strand, within SMc03168at 3129.672 kb on - strand, within SMc03168at 3129.672 kb on - strand, within SMc03168at 3129.712 kb on + strand, within SMc03168at 3129.712 kb on + strand, within SMc03168at 3129.712 kb on + strand, within SMc03168at 3129.712 kb on + strand, within SMc03168at 3129.712 kb on + strand, within SMc03168at 3129.712 kb on + strand, within SMc03168at 3129.713 kb on - strand, within SMc03168at 3129.713 kb on - strand, within SMc03168at 3129.713 kb on - strand, within SMc03168at 3129.713 kb on - strand, within SMc03168at 3129.716 kb on + strand, within SMc03168at 3129.716 kb on + strand, within SMc03168at 3129.716 kb on + strand, within SMc03168at 3129.717 kb on - strand, within SMc03168at 3129.717 kb on - strand, within SMc03168at 3129.717 kb on - strand, within SMc03168at 3129.770 kb on + strand, within SMc03168at 3129.923 kb on - strandat 3130.042 kb on - strandat 3130.042 kb on - strandat 3130.042 kb on - strandat 3130.060 kb on + strandat 3130.061 kb on - strandat 3130.213 kb on + strandat 3130.936 kb on - strandat 3130.970 kb on + strandat 3131.025 kb on + strandat 3131.025 kb on + strandat 3131.025 kb on + strandat 3131.026 kb on - strandat 3131.110 kb on + strandat 3131.112 kb on + strandat 3131.113 kb on - strandat 3131.113 kb on - strandat 3131.113 kb on - strandat 3131.113 kb on - strandat 3131.113 kb on - strandat 3131.113 kb on - strandat 3131.204 kb on + strand, within SMc03170at 3131.204 kb on + strand, within SMc03170at 3131.204 kb on + strand, within SMc03170at 3131.204 kb on + strand, within SMc03170at 3131.205 kb on - strand, within SMc03170at 3131.205 kb on - strand, within SMc03170at 3131.205 kb on - strand, within SMc03170at 3131.205 kb on - strand, within SMc03170at 3131.205 kb on - strand, within SMc03170at 3131.205 kb on - strand, within SMc03170at 3131.224 kb on - strand, within SMc03170at 3131.292 kb on - strand, within SMc03170at 3131.489 kb on + strand, within SMc03170at 3131.489 kb on + strand, within SMc03170at 3131.489 kb on + strand, within SMc03170at 3131.489 kb on + strand, within SMc03170at 3131.489 kb on + strand, within SMc03170at 3131.489 kb on + strand, within SMc03170at 3131.489 kb on + strand, within SMc03170at 3131.489 kb on + strand, within SMc03170at 3131.490 kb on - strand, within SMc03170at 3131.490 kb on - strand, within SMc03170at 3131.490 kb on - strand, within SMc03170at 3131.543 kb on + strand, within SMc03170at 3131.544 kb on - strand, within SMc03170at 3131.544 kb on - strand, within SMc03170at 3131.576 kb on - strand, within SMc03170at 3131.627 kb on + strand, within SMc03170at 3131.646 kb on + strand, within SMc03170at 3131.647 kb on - strand, within SMc03170at 3131.828 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.05 mg/ml
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3,129,322 - SMc03168 0.48 +0.0
3,129,340 + SMc03168 0.49 -1.0
3,129,341 - SMc03168 0.49 -0.0
3,129,594 - SMc03168 0.71 +0.5
3,129,671 + SMc03168 0.78 -0.2
3,129,671 + SMc03168 0.78 +0.7
3,129,672 - SMc03168 0.78 +1.2
3,129,672 - SMc03168 0.78 +0.5
3,129,672 - SMc03168 0.78 +0.7
3,129,712 + SMc03168 0.82 -0.6
3,129,712 + SMc03168 0.82 -0.3
3,129,712 + SMc03168 0.82 +0.5
3,129,712 + SMc03168 0.82 -0.2
3,129,712 + SMc03168 0.82 +0.6
3,129,712 + SMc03168 0.82 +1.3
3,129,713 - SMc03168 0.82 -0.6
3,129,713 - SMc03168 0.82 +0.8
3,129,713 - SMc03168 0.82 -1.1
3,129,713 - SMc03168 0.82 -2.1
3,129,716 + SMc03168 0.82 +0.3
3,129,716 + SMc03168 0.82 -0.1
3,129,716 + SMc03168 0.82 -0.0
3,129,717 - SMc03168 0.82 +0.5
3,129,717 - SMc03168 0.82 -0.1
3,129,717 - SMc03168 0.82 -0.2
3,129,770 + SMc03168 0.87 +1.5
3,129,923 - -0.1
3,130,042 - +0.0
3,130,042 - +0.4
3,130,042 - +0.3
3,130,060 + +0.3
3,130,061 - +0.7
3,130,213 + -0.4
3,130,936 - -0.6
3,130,970 + +0.6
3,131,025 + -0.5
3,131,025 + +0.6
3,131,025 + -0.8
3,131,026 - -0.4
3,131,110 + +0.7
3,131,112 + +1.3
3,131,113 - +0.3
3,131,113 - -0.0
3,131,113 - +1.3
3,131,113 - -0.5
3,131,113 - -1.2
3,131,113 - +0.7
3,131,204 + SMc03170 0.17 -0.3
3,131,204 + SMc03170 0.17 +0.4
3,131,204 + SMc03170 0.17 -0.4
3,131,204 + SMc03170 0.17 +0.4
3,131,205 - SMc03170 0.18 -1.3
3,131,205 - SMc03170 0.18 -0.8
3,131,205 - SMc03170 0.18 +0.3
3,131,205 - SMc03170 0.18 +1.7
3,131,205 - SMc03170 0.18 +0.0
3,131,205 - SMc03170 0.18 -0.2
3,131,224 - SMc03170 0.20 -0.2
3,131,292 - SMc03170 0.28 +0.1
3,131,489 + SMc03170 0.51 -0.2
3,131,489 + SMc03170 0.51 +0.4
3,131,489 + SMc03170 0.51 -0.3
3,131,489 + SMc03170 0.51 -0.6
3,131,489 + SMc03170 0.51 -1.2
3,131,489 + SMc03170 0.51 +0.3
3,131,489 + SMc03170 0.51 +0.1
3,131,489 + SMc03170 0.51 +0.3
3,131,490 - SMc03170 0.52 +0.1
3,131,490 - SMc03170 0.52 -0.2
3,131,490 - SMc03170 0.52 +0.3
3,131,543 + SMc03170 0.58 -0.6
3,131,544 - SMc03170 0.58 -2.2
3,131,544 - SMc03170 0.58 +2.0
3,131,576 - SMc03170 0.62 +0.0
3,131,627 + SMc03170 0.68 +0.0
3,131,646 + SMc03170 0.70 -0.8
3,131,647 - SMc03170 0.70 +0.2
3,131,828 + +0.7

Or see this region's nucleotide sequence