Experiment: Paraquat dichloride 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03049 and SMc03050 are separated by 37 nucleotides SMc03050 and SMc03051 overlap by 4 nucleotides SMc03051 and SMc03052 overlap by 10 nucleotides SMc03052 and SMc03053 are separated by 6 nucleotides SMc03053 and SMc03054 are separated by 124 nucleotides
SMc03049: SMc03049 - flagellar hook-associated protein FlgL, at 745,927 to 746,964
SMc03049
SMc03050: SMc03050 - flagellar biosynthesis regulatory protein FlaF, at 747,002 to 747,349
SMc03050
SMc03051: SMc03051 - flagellar biosynthesis repressor FlbT, at 747,346 to 747,795
SMc03051
SMc03052: SMc03052 - flagellar basal body rod modification protein, at 747,786 to 748,202
SMc03052
SMc03053: SMc03053 - flagellar biosynthesis protein FliQ, at 748,209 to 748,475
SMc03053
SMc03054: SMc03054 - flagellar biosynthesis protein FlhA, at 748,600 to 750,687
SMc03054
Position (kb) 747
748 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 746.374 kb on + strand, within SMc03049 at 746.374 kb on + strand, within SMc03049 at 746.374 kb on + strand, within SMc03049 at 746.375 kb on - strand, within SMc03049 at 746.375 kb on - strand, within SMc03049 at 746.377 kb on - strand, within SMc03049 at 746.419 kb on + strand, within SMc03049 at 746.419 kb on + strand, within SMc03049 at 746.419 kb on + strand, within SMc03049 at 746.420 kb on - strand, within SMc03049 at 746.420 kb on - strand, within SMc03049 at 746.420 kb on - strand, within SMc03049 at 746.439 kb on + strand, within SMc03049 at 746.440 kb on - strand, within SMc03049 at 746.440 kb on - strand, within SMc03049 at 746.440 kb on - strand, within SMc03049 at 746.440 kb on - strand, within SMc03049 at 746.490 kb on + strand, within SMc03049 at 746.692 kb on + strand, within SMc03049 at 746.693 kb on - strand, within SMc03049 at 746.734 kb on - strand, within SMc03049 at 746.734 kb on - strand, within SMc03049 at 746.797 kb on - strand, within SMc03049 at 746.797 kb on - strand, within SMc03049 at 746.835 kb on + strand, within SMc03049 at 746.835 kb on + strand, within SMc03049 at 746.835 kb on + strand, within SMc03049 at 746.835 kb on + strand, within SMc03049 at 746.835 kb on + strand, within SMc03049 at 746.836 kb on - strand, within SMc03049 at 746.836 kb on - strand, within SMc03049 at 746.836 kb on - strand, within SMc03049 at 746.839 kb on - strand, within SMc03049 at 746.863 kb on + strand at 746.864 kb on - strand at 746.914 kb on + strand at 746.914 kb on + strand at 746.915 kb on - strand at 746.915 kb on - strand at 746.915 kb on - strand at 746.952 kb on - strand at 746.963 kb on - strand at 746.963 kb on - strand at 746.969 kb on + strand at 747.005 kb on + strand at 747.005 kb on + strand at 747.017 kb on + strand at 747.123 kb on - strand, within SMc03050 at 747.123 kb on - strand, within SMc03050 at 747.149 kb on + strand, within SMc03050 at 747.149 kb on + strand, within SMc03050 at 747.318 kb on + strand at 747.318 kb on + strand at 747.318 kb on + strand at 747.318 kb on + strand at 747.319 kb on - strand at 747.319 kb on - strand at 747.363 kb on + strand at 747.363 kb on + strand at 747.364 kb on - strand at 747.364 kb on - strand at 747.396 kb on - strand, within SMc03051 at 747.517 kb on + strand, within SMc03051 at 747.518 kb on - strand, within SMc03051 at 747.726 kb on - strand, within SMc03051 at 747.767 kb on + strand at 747.822 kb on + strand at 747.823 kb on - strand at 747.823 kb on - strand at 747.882 kb on + strand, within SMc03052 at 747.883 kb on - strand, within SMc03052 at 748.126 kb on + strand, within SMc03052 at 748.127 kb on - strand, within SMc03052 at 748.129 kb on - strand, within SMc03052 at 748.192 kb on + strand at 748.237 kb on + strand, within SMc03053 at 748.238 kb on - strand, within SMc03053 at 748.460 kb on - strand at 748.474 kb on - strand at 748.502 kb on + strand at 748.503 kb on - strand at 748.503 kb on - strand at 748.529 kb on + strand at 748.530 kb on - strand at 748.530 kb on - strand at 748.530 kb on - strand at 748.530 kb on - strand at 748.560 kb on + strand at 748.561 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.05 mg/ml remove 746,374 + SMc03049 0.43 -0.5 746,374 + SMc03049 0.43 -0.6 746,374 + SMc03049 0.43 +0.1 746,375 - SMc03049 0.43 -0.0 746,375 - SMc03049 0.43 -1.3 746,377 - SMc03049 0.43 +3.3 746,419 + SMc03049 0.47 +0.7 746,419 + SMc03049 0.47 +0.8 746,419 + SMc03049 0.47 -1.1 746,420 - SMc03049 0.47 -0.6 746,420 - SMc03049 0.47 -0.7 746,420 - SMc03049 0.47 +1.6 746,439 + SMc03049 0.49 -0.0 746,440 - SMc03049 0.49 -0.1 746,440 - SMc03049 0.49 -0.9 746,440 - SMc03049 0.49 -1.5 746,440 - SMc03049 0.49 -1.1 746,490 + SMc03049 0.54 -1.2 746,692 + SMc03049 0.74 +0.2 746,693 - SMc03049 0.74 -1.0 746,734 - SMc03049 0.78 -0.4 746,734 - SMc03049 0.78 -0.8 746,797 - SMc03049 0.84 -0.7 746,797 - SMc03049 0.84 -0.2 746,835 + SMc03049 0.87 -0.7 746,835 + SMc03049 0.87 +1.3 746,835 + SMc03049 0.87 -0.7 746,835 + SMc03049 0.87 -0.7 746,835 + SMc03049 0.87 -0.7 746,836 - SMc03049 0.88 -0.9 746,836 - SMc03049 0.88 -0.6 746,836 - SMc03049 0.88 -2.4 746,839 - SMc03049 0.88 -0.8 746,863 + +0.5 746,864 - -1.1 746,914 + +0.8 746,914 + -0.4 746,915 - -0.6 746,915 - -1.5 746,915 - -0.5 746,952 - -0.4 746,963 - -0.1 746,963 - -0.6 746,969 + +0.1 747,005 + +0.3 747,005 + -0.9 747,017 + -0.7 747,123 - SMc03050 0.35 +0.8 747,123 - SMc03050 0.35 +2.2 747,149 + SMc03050 0.42 -0.6 747,149 + SMc03050 0.42 -0.1 747,318 + +0.4 747,318 + -0.0 747,318 + +0.1 747,318 + -0.0 747,319 - -2.2 747,319 - +0.2 747,363 + -0.3 747,363 + -2.5 747,364 - +0.7 747,364 - -0.3 747,396 - SMc03051 0.11 -1.2 747,517 + SMc03051 0.38 -1.4 747,518 - SMc03051 0.38 -0.8 747,726 - SMc03051 0.84 -1.0 747,767 + -0.5 747,822 + +0.1 747,823 - -1.3 747,823 - +0.6 747,882 + SMc03052 0.23 -0.1 747,883 - SMc03052 0.23 -2.0 748,126 + SMc03052 0.82 -0.1 748,127 - SMc03052 0.82 -0.8 748,129 - SMc03052 0.82 -0.2 748,192 + +0.1 748,237 + SMc03053 0.10 +0.8 748,238 - SMc03053 0.11 +0.0 748,460 - +0.2 748,474 - +1.5 748,502 + +0.3 748,503 - -0.5 748,503 - -1.0 748,529 + -0.2 748,530 - +2.8 748,530 - -0.0 748,530 - -0.1 748,530 - +0.4 748,560 + +0.2 748,561 - +0.0
Or see this region's nucleotide sequence