Experiment: Paraquat dichloride 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02793 and SMc02792 are separated by 47 nucleotides SMc02792 and SMc02791 overlap by 8 nucleotides SMc02791 and SMc02790 overlap by 4 nucleotides SMc02790 and SMc02789 are separated by 193 nucleotides
SMc02793: SMc02793 - hypothetical protein, at 478 to 1,299
SMc02793
SMc02792: SMc02792 - Maf-like protein, at 1,347 to 1,946
SMc02792
SMc02791: SMc02791 - shikimate 5-dehydrogenase, at 1,939 to 2,799
SMc02791
SMc02790: SMc02790 - dephospho-CoA kinase, at 2,796 to 3,380
SMc02790
SMc02789: SMc02789 - DNA polymerase III subunit epsilon, at 3,574 to 4,302
SMc02789
Position (kb) 1
2
3 Strain fitness (log2 ratio) -1
0
1
2 at 0.970 kb on + strand, within SMc02793 at 0.988 kb on - strand, within SMc02793 at 1.004 kb on + strand, within SMc02793 at 1.004 kb on + strand, within SMc02793 at 1.004 kb on + strand, within SMc02793 at 1.074 kb on + strand, within SMc02793 at 1.154 kb on - strand, within SMc02793 at 1.154 kb on - strand, within SMc02793 at 1.156 kb on - strand, within SMc02793 at 1.185 kb on + strand, within SMc02793 at 1.185 kb on + strand, within SMc02793 at 1.186 kb on - strand, within SMc02793 at 1.186 kb on - strand, within SMc02793 at 1.189 kb on + strand, within SMc02793 at 1.189 kb on + strand, within SMc02793 at 1.293 kb on + strand at 1.293 kb on + strand at 1.293 kb on + strand at 1.294 kb on - strand at 1.821 kb on + strand, within SMc02792 at 3.438 kb on + strand at 3.438 kb on + strand at 3.439 kb on - strand at 3.439 kb on - strand at 3.464 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.05 mg/ml remove 970 + SMc02793 0.60 +1.2 988 - SMc02793 0.62 +0.6 1,004 + SMc02793 0.64 +1.8 1,004 + SMc02793 0.64 +0.6 1,004 + SMc02793 0.64 +1.6 1,074 + SMc02793 0.73 +1.6 1,154 - SMc02793 0.82 +1.2 1,154 - SMc02793 0.82 +1.1 1,156 - SMc02793 0.82 +0.4 1,185 + SMc02793 0.86 +1.1 1,185 + SMc02793 0.86 +0.9 1,186 - SMc02793 0.86 +0.8 1,186 - SMc02793 0.86 -0.5 1,189 + SMc02793 0.86 +0.1 1,189 + SMc02793 0.86 +0.7 1,293 + +1.2 1,293 + -1.5 1,293 + -0.4 1,294 - -0.3 1,821 + SMc02792 0.79 +2.1 3,438 + -0.1 3,438 + +0.2 3,439 - -1.0 3,439 - -0.5 3,464 - +0.1
Or see this region's nucleotide sequence