Experiment: Paraquat dichloride 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02572 and SMc02573 overlap by 1 nucleotides SMc02573 and SMc02574 are separated by 26 nucleotides SMc02574 and SMc02575 are separated by 320 nucleotides SMc02575 and SMc02576 overlap by 11 nucleotides
SMc02572: SMc02572 - imidazole glycerol phosphate synthase subunit HisH, at 59,458 to 60,108
SMc02572
SMc02573: SMc02573 - hypothetical protein, at 60,108 to 60,581
SMc02573
SMc02574: SMc02574 - imidazoleglycerol-phosphate dehydratase, at 60,608 to 61,216
SMc02574
SMc02575: SMc02575 - ATP-dependent protease peptidase subunit, at 61,537 to 62,094
SMc02575
SMc02576: SMc02576 - acetyltransferase, at 62,084 to 62,605
SMc02576
Position (kb) 60
61
62 Strain fitness (log2 ratio) -2
-1
0
1
2 at 59.627 kb on + strand, within SMc02572 at 59.627 kb on + strand, within SMc02572 at 59.628 kb on - strand, within SMc02572 at 60.232 kb on + strand, within SMc02573 at 60.233 kb on - strand, within SMc02573 at 60.572 kb on - strand at 60.572 kb on - strand at 60.572 kb on - strand at 60.598 kb on - strand at 60.598 kb on - strand at 60.598 kb on - strand at 60.736 kb on - strand, within SMc02574 at 60.736 kb on - strand at 60.927 kb on + strand, within SMc02574 at 60.928 kb on - strand, within SMc02574 at 61.084 kb on + strand, within SMc02574 at 61.084 kb on + strand, within SMc02574 at 61.085 kb on - strand, within SMc02574 at 61.085 kb on - strand, within SMc02574 at 61.085 kb on - strand, within SMc02574 at 61.085 kb on - strand, within SMc02574 at 61.264 kb on - strand at 61.348 kb on + strand at 61.348 kb on + strand at 61.349 kb on - strand at 61.368 kb on - strand at 61.466 kb on + strand at 61.467 kb on - strand at 61.467 kb on - strand at 61.470 kb on + strand at 61.471 kb on - strand at 61.471 kb on - strand at 61.585 kb on - strand at 61.585 kb on - strand at 61.585 kb on - strand at 61.650 kb on + strand, within SMc02575 at 61.650 kb on + strand, within SMc02575 at 61.800 kb on - strand, within SMc02575 at 61.821 kb on + strand, within SMc02575 at 61.821 kb on + strand, within SMc02575 at 61.831 kb on + strand, within SMc02575 at 61.831 kb on + strand, within SMc02575 at 61.832 kb on - strand, within SMc02575 at 61.832 kb on - strand, within SMc02575 at 61.954 kb on + strand, within SMc02575 at 61.955 kb on - strand, within SMc02575 at 62.050 kb on + strand at 62.050 kb on + strand at 62.051 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.05 mg/ml remove 59,627 + SMc02572 0.26 -0.6 59,627 + SMc02572 0.26 -0.7 59,628 - SMc02572 0.26 -0.4 60,232 + SMc02573 0.26 -1.2 60,233 - SMc02573 0.26 -0.4 60,572 - -0.6 60,572 - -1.9 60,572 - -1.1 60,598 - -0.1 60,598 - -0.0 60,598 - +0.2 60,736 - SMc02574 0.21 +0.4 60,736 - -0.1 60,927 + SMc02574 0.52 -1.5 60,928 - SMc02574 0.53 -0.6 61,084 + SMc02574 0.78 -1.1 61,084 + SMc02574 0.78 -0.4 61,085 - SMc02574 0.78 -0.0 61,085 - SMc02574 0.78 +1.0 61,085 - SMc02574 0.78 -0.5 61,085 - SMc02574 0.78 -1.3 61,264 - +1.6 61,348 + -0.2 61,348 + -1.5 61,349 - +0.0 61,368 - +0.1 61,466 + +0.3 61,467 - +1.2 61,467 - +0.2 61,470 + -1.7 61,471 - +1.4 61,471 - +1.8 61,585 - +0.8 61,585 - +1.0 61,585 - +0.6 61,650 + SMc02575 0.20 +0.9 61,650 + SMc02575 0.20 -0.4 61,800 - SMc02575 0.47 +1.0 61,821 + SMc02575 0.51 +0.4 61,821 + SMc02575 0.51 +0.6 61,831 + SMc02575 0.53 -0.1 61,831 + SMc02575 0.53 +1.7 61,832 - SMc02575 0.53 +0.9 61,832 - SMc02575 0.53 +1.7 61,954 + SMc02575 0.75 +0.7 61,955 - SMc02575 0.75 +1.1 62,050 + +0.3 62,050 + +1.9 62,051 - +1.3
Or see this region's nucleotide sequence