Experiment: Paraquat dichloride 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02567 and SMc02568 overlap by 4 nucleotides SMc02568 and SMc02569 are separated by 64 nucleotides SMc02569 and SMc02570 overlap by 4 nucleotides
SMc02567: SMc02567 - pantothenate kinase, at 56,529 to 57,524
SMc02567
SMc02568: SMc02568 - phosphoribosyl-ATP pyrophosphatase, at 57,521 to 57,844
SMc02568
SMc02569: SMc02569 - imidazole glycerol phosphate synthase subunit HisF, at 57,909 to 58,685
SMc02569
SMc02570: SMc02570 - 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) <small>(from data)</small>, at 58,682 to 59,425
SMc02570
Position (kb) 57
58 Strain fitness (log2 ratio) -1
0
1 at 57.632 kb on - strand, within SMc02568 at 57.639 kb on + strand, within SMc02568 at 57.864 kb on + strand at 57.865 kb on - strand at 57.873 kb on + strand at 57.874 kb on - strand at 57.903 kb on - strand at 57.971 kb on - strand at 58.248 kb on + strand, within SMc02569 at 58.248 kb on + strand, within SMc02569 at 58.248 kb on + strand, within SMc02569 at 58.248 kb on + strand, within SMc02569 at 58.567 kb on + strand, within SMc02569 at 58.665 kb on + strand at 58.685 kb on + strand at 58.685 kb on + strand at 58.686 kb on - strand at 58.686 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.05 mg/ml remove 57,632 - SMc02568 0.34 -0.3 57,639 + SMc02568 0.36 +0.5 57,864 + -0.5 57,865 - +1.1 57,873 + -0.9 57,874 - -0.8 57,903 - +0.1 57,971 - -1.0 58,248 + SMc02569 0.44 +0.8 58,248 + SMc02569 0.44 -0.9 58,248 + SMc02569 0.44 -0.1 58,248 + SMc02569 0.44 -0.7 58,567 + SMc02569 0.85 -0.2 58,665 + -0.5 58,685 + -0.7 58,685 + -0.7 58,686 - -0.6 58,686 - -0.2
Or see this region's nucleotide sequence