Experiment: Paraquat dichloride 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02478 and SMc02477 are separated by 41 nucleotides SMc02477 and SMc02476 are separated by 7 nucleotides SMc02476 and SMc02475 are separated by 217 nucleotides SMc02475 and SMc02474 are separated by 195 nucleotides
SMc02478: SMc02478 - hypothetical protein, at 3,319,643 to 3,320,797
SMc02478
SMc02477: SMc02477 - hypothetical protein, at 3,320,839 to 3,321,105
SMc02477
SMc02476: SMc02476 - hypothetical protein, at 3,321,113 to 3,321,391
SMc02476
SMc02475: SMc02475 - outer membrane lipoprotein, at 3,321,609 to 3,322,148
SMc02475
SMc02474: SMc02474 - ABC transporter ATP-binding protein, at 3,322,344 to 3,323,414
SMc02474
Position (kb)
3321
3322 Strain fitness (log2 ratio)
-1
0
1
2 at 3320.174 kb on + strand, within SMc02478 at 3320.460 kb on + strand, within SMc02478 at 3320.460 kb on + strand, within SMc02478 at 3320.460 kb on + strand, within SMc02478 at 3320.460 kb on + strand, within SMc02478 at 3320.461 kb on - strand, within SMc02478 at 3320.461 kb on - strand, within SMc02478 at 3320.461 kb on - strand, within SMc02478 at 3320.585 kb on - strand, within SMc02478 at 3320.586 kb on + strand, within SMc02478 at 3320.586 kb on + strand, within SMc02478 at 3320.586 kb on + strand, within SMc02478 at 3320.586 kb on + strand, within SMc02478 at 3320.587 kb on - strand, within SMc02478 at 3320.587 kb on - strand, within SMc02478 at 3320.587 kb on - strand, within SMc02478 at 3320.587 kb on - strand, within SMc02478 at 3320.587 kb on - strand, within SMc02478 at 3320.587 kb on - strand, within SMc02478 at 3320.809 kb on - strand at 3320.809 kb on - strand at 3321.141 kb on + strand, within SMc02476 at 3321.142 kb on - strand, within SMc02476 at 3321.202 kb on - strand, within SMc02476 at 3321.502 kb on + strand at 3321.518 kb on - strand at 3322.378 kb on + strand at 3322.379 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.05 mg/ml remove 3,320,174 + SMc02478 0.46 +1.2 3,320,460 + SMc02478 0.71 +0.7 3,320,460 + SMc02478 0.71 +0.9 3,320,460 + SMc02478 0.71 +0.8 3,320,460 + SMc02478 0.71 +0.2 3,320,461 - SMc02478 0.71 +0.8 3,320,461 - SMc02478 0.71 +0.7 3,320,461 - SMc02478 0.71 +1.1 3,320,585 - SMc02478 0.82 +1.7 3,320,586 + SMc02478 0.82 +0.6 3,320,586 + SMc02478 0.82 +0.9 3,320,586 + SMc02478 0.82 +0.2 3,320,586 + SMc02478 0.82 +0.7 3,320,587 - SMc02478 0.82 +1.4 3,320,587 - SMc02478 0.82 -1.1 3,320,587 - SMc02478 0.82 -0.0 3,320,587 - SMc02478 0.82 +2.0 3,320,587 - SMc02478 0.82 +1.7 3,320,587 - SMc02478 0.82 +0.8 3,320,809 - -0.1 3,320,809 - +0.8 3,321,141 + SMc02476 0.10 -0.3 3,321,142 - SMc02476 0.10 -0.6 3,321,202 - SMc02476 0.32 -0.8 3,321,502 + -0.1 3,321,518 - -0.6 3,322,378 + +0.4 3,322,379 - -1.5
Or see this region's nucleotide sequence