Strain Fitness in Sinorhizobium meliloti 1021 around SMc02246

Experiment: Paraquat dichloride 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02245 and SMc02246 overlap by 4 nucleotidesSMc02246 and SMc02247 are separated by 120 nucleotidesSMc02247 and SMc02248 are separated by 141 nucleotides SMc02245: SMc02245 - dihydroorotate dehydrogenase 2, at 608,536 to 609,624 SMc02245 SMc02246: SMc02246 - hypothetical protein, at 609,621 to 609,968 SMc02246 SMc02247: SMc02247 - signal peptide protein, at 610,089 to 610,526 SMc02247 SMc02248: SMc02248 - transcriptional regulator, at 610,668 to 611,315 SMc02248 Position (kb) 609 610Strain fitness (log2 ratio) -1 0 1 2 3at 608.678 kb on + strand, within SMc02245at 608.679 kb on - strand, within SMc02245at 609.167 kb on + strand, within SMc02245at 609.167 kb on + strand, within SMc02245at 609.208 kb on - strand, within SMc02245at 609.280 kb on - strand, within SMc02245at 609.930 kb on + strand, within SMc02246at 609.952 kb on + strandat 609.952 kb on + strandat 609.952 kb on + strandat 609.952 kb on + strandat 609.952 kb on + strandat 609.953 kb on - strandat 609.953 kb on - strandat 609.953 kb on - strandat 609.954 kb on + strandat 609.955 kb on - strandat 609.959 kb on + strandat 610.176 kb on + strand, within SMc02247at 610.596 kb on + strandat 610.596 kb on + strandat 610.597 kb on - strandat 610.597 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.05 mg/ml
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608,678 + SMc02245 0.13 +1.9
608,679 - SMc02245 0.13 +1.4
609,167 + SMc02245 0.58 +1.3
609,167 + SMc02245 0.58 +1.7
609,208 - SMc02245 0.62 +2.8
609,280 - SMc02245 0.68 +2.0
609,930 + SMc02246 0.89 +1.7
609,952 + +2.6
609,952 + +2.0
609,952 + +1.8
609,952 + +1.9
609,952 + +2.0
609,953 - +1.4
609,953 - +1.1
609,953 - +1.3
609,954 + +1.8
609,955 - +1.7
609,959 + +2.7
610,176 + SMc02247 0.20 -0.5
610,596 + -0.1
610,596 + +0.4
610,597 - +0.7
610,597 - -0.1

Or see this region's nucleotide sequence