Strain Fitness in Sinorhizobium meliloti 1021 around SMc01770

Experiment: Paraquat dichloride 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01769 and SMc01770 are separated by 184 nucleotidesSMc01770 and SMc01771 are separated by 12 nucleotidesSMc01771 and SMc01772 are separated by 17 nucleotides SMc01769: SMc01769 - hypothetical protein, at 1,315,387 to 1,316,718 SMc01769 SMc01770: SMc01770 - serine hydroxymethyltransferase, at 1,316,903 to 1,318,198 SMc01770 SMc01771: SMc01771 - transcriptional regulator NrdR, at 1,318,211 to 1,318,684 SMc01771 SMc01772: SMc01772 - riboflavin biosynthesis protein, at 1,318,702 to 1,319,907 SMc01772 Position (kb) 1316 1317 1318 1319Strain fitness (log2 ratio) -2 -1 0 1 2at 1315.978 kb on + strand, within SMc01769at 1315.978 kb on + strand, within SMc01769at 1315.979 kb on - strand, within SMc01769at 1315.979 kb on - strand, within SMc01769at 1315.979 kb on - strand, within SMc01769at 1315.979 kb on - strand, within SMc01769at 1315.979 kb on - strand, within SMc01769at 1315.979 kb on - strand, within SMc01769at 1316.005 kb on + strand, within SMc01769at 1316.006 kb on - strand, within SMc01769at 1316.007 kb on + strand, within SMc01769at 1316.101 kb on + strand, within SMc01769at 1316.123 kb on - strand, within SMc01769at 1316.188 kb on + strand, within SMc01769at 1316.189 kb on - strand, within SMc01769at 1316.359 kb on + strand, within SMc01769at 1316.359 kb on + strand, within SMc01769at 1316.359 kb on + strand, within SMc01769at 1316.561 kb on - strand, within SMc01769at 1316.561 kb on - strand, within SMc01769at 1316.569 kb on + strand, within SMc01769at 1316.569 kb on + strand, within SMc01769at 1316.569 kb on + strand, within SMc01769at 1316.569 kb on + strand, within SMc01769at 1316.569 kb on + strand, within SMc01769at 1316.570 kb on - strand, within SMc01769at 1316.570 kb on - strand, within SMc01769at 1316.570 kb on - strand, within SMc01769at 1316.570 kb on - strand, within SMc01769at 1316.570 kb on - strand, within SMc01769at 1316.570 kb on - strand, within SMc01769at 1316.572 kb on - strand, within SMc01769at 1316.623 kb on + strandat 1316.624 kb on - strandat 1316.624 kb on - strandat 1316.624 kb on - strandat 1317.113 kb on + strand, within SMc01770at 1317.938 kb on + strand, within SMc01770at 1318.184 kb on + strandat 1318.184 kb on + strandat 1318.190 kb on + strandat 1318.190 kb on + strandat 1318.190 kb on + strandat 1318.191 kb on - strandat 1318.192 kb on + strandat 1318.192 kb on + strandat 1318.223 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.05 mg/ml
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1,315,978 + SMc01769 0.44 +0.9
1,315,978 + SMc01769 0.44 -0.1
1,315,979 - SMc01769 0.44 +0.6
1,315,979 - SMc01769 0.44 +0.1
1,315,979 - SMc01769 0.44 -0.1
1,315,979 - SMc01769 0.44 -0.3
1,315,979 - SMc01769 0.44 +0.2
1,315,979 - SMc01769 0.44 -0.5
1,316,005 + SMc01769 0.46 +0.0
1,316,006 - SMc01769 0.46 +0.0
1,316,007 + SMc01769 0.47 +0.4
1,316,101 + SMc01769 0.54 -0.5
1,316,123 - SMc01769 0.55 -0.0
1,316,188 + SMc01769 0.60 +0.4
1,316,189 - SMc01769 0.60 +0.8
1,316,359 + SMc01769 0.73 -0.3
1,316,359 + SMc01769 0.73 -0.1
1,316,359 + SMc01769 0.73 -0.4
1,316,561 - SMc01769 0.88 +0.1
1,316,561 - SMc01769 0.88 -0.1
1,316,569 + SMc01769 0.89 -0.1
1,316,569 + SMc01769 0.89 +0.0
1,316,569 + SMc01769 0.89 +1.8
1,316,569 + SMc01769 0.89 +0.6
1,316,569 + SMc01769 0.89 +0.0
1,316,570 - SMc01769 0.89 +0.4
1,316,570 - SMc01769 0.89 -0.1
1,316,570 - SMc01769 0.89 +0.1
1,316,570 - SMc01769 0.89 -0.5
1,316,570 - SMc01769 0.89 -0.1
1,316,570 - SMc01769 0.89 -1.4
1,316,572 - SMc01769 0.89 +0.4
1,316,623 + -0.3
1,316,624 - +0.5
1,316,624 - +0.9
1,316,624 - -0.1
1,317,113 + SMc01770 0.16 -0.2
1,317,938 + SMc01770 0.80 -1.4
1,318,184 + +0.7
1,318,184 + +0.7
1,318,190 + -1.4
1,318,190 + -0.1
1,318,190 + +0.5
1,318,191 - -2.4
1,318,192 + -0.6
1,318,192 + -1.0
1,318,223 + -2.7

Or see this region's nucleotide sequence