Strain Fitness in Sinorhizobium meliloti 1021 around SMc01361

Experiment: Paraquat dichloride 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01363 and SMc01362 overlap by 1 nucleotidesSMc01362 and SMc01361 are separated by 29 nucleotidesSMc01361 and SMc01360 overlap by 4 nucleotides SMc01363: SMc01363 - hypothetical protein, at 1,419,891 to 1,421,042 SMc01363 SMc01362: SMc01362 - glycerol-3-phosphate acyltransferase PlsY, at 1,421,042 to 1,421,653 SMc01362 SMc01361: SMc01361 - dihydroorotase, at 1,421,683 to 1,422,975 SMc01361 SMc01360: SMc01360 - aspartate carbamoyltransferase catalytic subunit, at 1,422,972 to 1,423,913 SMc01360 Position (kb) 1421 1422 1423Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1421.715 kb on - strandat 1421.715 kb on - strandat 1421.923 kb on + strand, within SMc01361at 1421.924 kb on - strand, within SMc01361at 1421.939 kb on + strand, within SMc01361at 1422.055 kb on - strand, within SMc01361at 1422.272 kb on + strand, within SMc01361at 1422.272 kb on + strand, within SMc01361at 1422.453 kb on - strand, within SMc01361at 1422.842 kb on - strand, within SMc01361at 1422.842 kb on - strand, within SMc01361at 1422.879 kb on + strandat 1423.181 kb on - strand, within SMc01360at 1423.181 kb on - strand, within SMc01360at 1423.184 kb on - strand, within SMc01360at 1423.184 kb on - strand, within SMc01360at 1423.184 kb on - strand, within SMc01360at 1423.193 kb on - strand, within SMc01360

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.05 mg/ml
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1,421,715 - -3.8
1,421,715 - -1.0
1,421,923 + SMc01361 0.19 +0.4
1,421,924 - SMc01361 0.19 -0.9
1,421,939 + SMc01361 0.20 -0.8
1,422,055 - SMc01361 0.29 -1.3
1,422,272 + SMc01361 0.46 -2.3
1,422,272 + SMc01361 0.46 -1.1
1,422,453 - SMc01361 0.60 -3.2
1,422,842 - SMc01361 0.90 -0.2
1,422,842 - SMc01361 0.90 -1.3
1,422,879 + -1.0
1,423,181 - SMc01360 0.22 +0.5
1,423,181 - SMc01360 0.22 -0.4
1,423,184 - SMc01360 0.23 -0.8
1,423,184 - SMc01360 0.23 -0.0
1,423,184 - SMc01360 0.23 +0.6
1,423,193 - SMc01360 0.23 -0.5

Or see this region's nucleotide sequence