Strain Fitness in Sinorhizobium meliloti 1021 around SMc01216

Experiment: Paraquat dichloride 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01217 and SMc01216 are separated by 3 nucleotidesSMc01216 and SMc01215 are separated by 128 nucleotides SMc01217: SMc01217 - transport transmembrane protein, at 1,706,955 to 1,708,424 SMc01217 SMc01216: SMc01216 - hypothetical protein, at 1,708,428 to 1,708,730 SMc01216 SMc01215: SMc01215 - carbamoyl phosphate synthase large subunit, at 1,708,859 to 1,712,350 SMc01215 Position (kb) 1708 1709Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1707.454 kb on + strand, within SMc01217at 1707.507 kb on + strand, within SMc01217at 1707.507 kb on + strand, within SMc01217at 1707.507 kb on + strand, within SMc01217at 1707.508 kb on - strand, within SMc01217at 1707.542 kb on - strand, within SMc01217at 1707.658 kb on + strand, within SMc01217at 1707.658 kb on + strand, within SMc01217at 1707.659 kb on - strand, within SMc01217at 1707.659 kb on - strand, within SMc01217at 1707.681 kb on - strand, within SMc01217at 1707.873 kb on + strand, within SMc01217at 1707.873 kb on + strand, within SMc01217at 1707.874 kb on - strand, within SMc01217at 1707.874 kb on - strand, within SMc01217at 1707.874 kb on - strand, within SMc01217at 1707.882 kb on + strand, within SMc01217at 1707.950 kb on - strand, within SMc01217at 1708.084 kb on - strand, within SMc01217at 1708.230 kb on + strand, within SMc01217at 1708.637 kb on - strand, within SMc01216at 1708.639 kb on + strand, within SMc01216at 1708.640 kb on - strand, within SMc01216at 1708.721 kb on - strandat 1708.723 kb on - strandat 1709.368 kb on + strand, within SMc01215

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.05 mg/ml
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1,707,454 + SMc01217 0.34 -0.7
1,707,507 + SMc01217 0.38 -1.9
1,707,507 + SMc01217 0.38 -1.9
1,707,507 + SMc01217 0.38 -3.6
1,707,508 - SMc01217 0.38 -0.1
1,707,542 - SMc01217 0.40 -2.1
1,707,658 + SMc01217 0.48 -0.8
1,707,658 + SMc01217 0.48 -2.8
1,707,659 - SMc01217 0.48 -3.2
1,707,659 - SMc01217 0.48 -2.4
1,707,681 - SMc01217 0.49 -0.1
1,707,873 + SMc01217 0.62 -2.6
1,707,873 + SMc01217 0.62 -1.8
1,707,874 - SMc01217 0.63 -3.4
1,707,874 - SMc01217 0.63 -2.2
1,707,874 - SMc01217 0.63 -1.7
1,707,882 + SMc01217 0.63 -2.3
1,707,950 - SMc01217 0.68 -0.5
1,708,084 - SMc01217 0.77 -2.6
1,708,230 + SMc01217 0.87 -1.7
1,708,637 - SMc01216 0.69 +0.1
1,708,639 + SMc01216 0.70 -0.8
1,708,640 - SMc01216 0.70 +0.1
1,708,721 - -0.3
1,708,723 - -0.0
1,709,368 + SMc01215 0.15 +3.4

Or see this region's nucleotide sequence