Experiment: Paraquat dichloride 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00971 and SMc00970 are separated by 216 nucleotides SMc00970 and SMc00969 are separated by 3 nucleotides SMc00969 and SMc00968 are separated by 62 nucleotides
SMc00971: SMc00971 - hypothetical protein, at 969,984 to 970,907
SMc00971
SMc00970: SMc00970 - exodeoxyribonuclease VII small subunit, at 971,124 to 971,375
SMc00970
SMc00969: SMc00969 - hypothetical protein, at 971,379 to 972,308
SMc00969
SMc00968: SMc00968 - oxidoreductase, at 972,371 to 973,339
SMc00968
Position (kb) 971
972
973 Strain fitness (log2 ratio) -2
-1
0
1 at 970.433 kb on + strand, within SMc00971 at 970.434 kb on - strand, within SMc00971 at 970.660 kb on + strand, within SMc00971 at 970.661 kb on - strand, within SMc00971 at 970.661 kb on - strand, within SMc00971 at 971.119 kb on + strand at 971.125 kb on + strand at 971.252 kb on - strand, within SMc00970 at 971.252 kb on - strand, within SMc00970 at 971.307 kb on - strand, within SMc00970 at 971.380 kb on + strand at 971.380 kb on + strand at 971.380 kb on + strand at 971.381 kb on - strand at 971.402 kb on + strand at 971.440 kb on + strand at 971.496 kb on + strand, within SMc00969 at 971.497 kb on - strand, within SMc00969 at 971.497 kb on - strand, within SMc00969 at 971.740 kb on + strand, within SMc00969 at 971.748 kb on + strand, within SMc00969 at 971.748 kb on + strand, within SMc00969 at 971.749 kb on - strand, within SMc00969 at 971.889 kb on + strand at 971.890 kb on - strand, within SMc00969 at 972.058 kb on + strand, within SMc00969 at 972.058 kb on + strand, within SMc00969 at 972.058 kb on + strand, within SMc00969 at 972.059 kb on - strand, within SMc00969 at 972.059 kb on - strand, within SMc00969 at 972.059 kb on - strand, within SMc00969 at 972.059 kb on - strand, within SMc00969 at 972.062 kb on + strand, within SMc00969 at 972.062 kb on + strand, within SMc00969 at 972.063 kb on - strand, within SMc00969 at 972.320 kb on - strand at 972.320 kb on - strand at 972.320 kb on - strand at 972.584 kb on + strand, within SMc00968 at 972.585 kb on - strand, within SMc00968 at 972.642 kb on + strand, within SMc00968 at 972.975 kb on + strand, within SMc00968 at 972.975 kb on + strand, within SMc00968 at 972.975 kb on + strand, within SMc00968 at 972.976 kb on - strand, within SMc00968 at 972.976 kb on - strand, within SMc00968 at 973.183 kb on + strand, within SMc00968 at 973.184 kb on - strand, within SMc00968 at 973.185 kb on + strand, within SMc00968 at 973.186 kb on - strand, within SMc00968 at 973.236 kb on - strand, within SMc00968
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.05 mg/ml remove 970,433 + SMc00971 0.49 -0.1 970,434 - SMc00971 0.49 -0.0 970,660 + SMc00971 0.73 -1.6 970,661 - SMc00971 0.73 -0.1 970,661 - SMc00971 0.73 -0.3 971,119 + -0.9 971,125 + -0.6 971,252 - SMc00970 0.51 -2.7 971,252 - SMc00970 0.51 -0.5 971,307 - SMc00970 0.73 -1.7 971,380 + -0.0 971,380 + +1.4 971,380 + -0.9 971,381 - +0.7 971,402 + +0.2 971,440 + -0.0 971,496 + SMc00969 0.13 -0.2 971,497 - SMc00969 0.13 +0.5 971,497 - SMc00969 0.13 +0.2 971,740 + SMc00969 0.39 -0.5 971,748 + SMc00969 0.40 -0.4 971,748 + SMc00969 0.40 -0.6 971,749 - SMc00969 0.40 +0.9 971,889 + -0.6 971,890 - SMc00969 0.55 -0.2 972,058 + SMc00969 0.73 +0.4 972,058 + SMc00969 0.73 -0.5 972,058 + SMc00969 0.73 +0.2 972,059 - SMc00969 0.73 -0.4 972,059 - SMc00969 0.73 +1.0 972,059 - SMc00969 0.73 -1.3 972,059 - SMc00969 0.73 +0.2 972,062 + SMc00969 0.73 -0.8 972,062 + SMc00969 0.73 +0.9 972,063 - SMc00969 0.74 -1.5 972,320 - -0.4 972,320 - +0.1 972,320 - -0.7 972,584 + SMc00968 0.22 -0.4 972,585 - SMc00968 0.22 -0.7 972,642 + SMc00968 0.28 -0.5 972,975 + SMc00968 0.62 -0.6 972,975 + SMc00968 0.62 -1.9 972,975 + SMc00968 0.62 -0.6 972,976 - SMc00968 0.62 +0.4 972,976 - SMc00968 0.62 +0.1 973,183 + SMc00968 0.84 -0.0 973,184 - SMc00968 0.84 -2.1 973,185 + SMc00968 0.84 -0.4 973,186 - SMc00968 0.84 -1.7 973,236 - SMc00968 0.89 +0.4
Or see this region's nucleotide sequence