Experiment: Paraquat dichloride 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00831 and SMc00832 are separated by 199 nucleotides SMc00832 and SMc00833 overlap by 4 nucleotides
SMc00831: SMc00831 - transcriptional regulator, at 852,348 to 853,244
SMc00831
SMc00832: SMc00832 - D-lactate dehydrogenase, FAD-linked subunit GlcD (EC 1.1.99.6) <small>(from data)</small>, at 853,444 to 854,883
SMc00832
SMc00833: SMc00833 - D-lactate dehydrogenase, FAD binding subunit GlcE (EC 1.1.99.6) <small>(from data)</small>, at 854,880 to 856,097
SMc00833
Position (kb) 853
854
855 Strain fitness (log2 ratio) -2
-1
0
1
2 at 852.733 kb on + strand, within SMc00831 at 852.734 kb on - strand, within SMc00831 at 853.000 kb on + strand, within SMc00831 at 853.000 kb on + strand, within SMc00831 at 853.000 kb on + strand, within SMc00831 at 853.001 kb on - strand, within SMc00831 at 853.001 kb on - strand, within SMc00831 at 853.001 kb on - strand, within SMc00831 at 853.048 kb on + strand, within SMc00831 at 853.048 kb on + strand, within SMc00831 at 853.048 kb on + strand, within SMc00831 at 853.049 kb on - strand, within SMc00831 at 853.049 kb on - strand, within SMc00831 at 853.190 kb on + strand at 853.190 kb on + strand at 853.191 kb on - strand at 853.191 kb on - strand at 853.191 kb on - strand at 853.311 kb on - strand at 853.312 kb on + strand at 853.313 kb on - strand at 853.313 kb on - strand at 853.352 kb on + strand at 853.352 kb on + strand at 853.352 kb on + strand at 853.353 kb on - strand at 853.353 kb on - strand at 853.353 kb on - strand at 853.663 kb on + strand, within SMc00832 at 853.663 kb on + strand, within SMc00832 at 853.663 kb on + strand, within SMc00832 at 853.676 kb on - strand, within SMc00832 at 853.839 kb on + strand, within SMc00832 at 853.873 kb on + strand, within SMc00832 at 853.910 kb on + strand, within SMc00832 at 853.958 kb on - strand, within SMc00832 at 853.958 kb on - strand, within SMc00832 at 853.965 kb on + strand, within SMc00832 at 854.053 kb on + strand, within SMc00832 at 854.454 kb on + strand, within SMc00832 at 854.491 kb on + strand, within SMc00832 at 854.491 kb on + strand, within SMc00832 at 854.492 kb on - strand, within SMc00832 at 854.492 kb on - strand, within SMc00832 at 854.492 kb on - strand, within SMc00832 at 854.493 kb on + strand, within SMc00832 at 854.493 kb on + strand, within SMc00832 at 854.493 kb on + strand, within SMc00832 at 854.493 kb on + strand, within SMc00832 at 854.493 kb on + strand, within SMc00832 at 854.493 kb on + strand, within SMc00832 at 854.493 kb on + strand, within SMc00832 at 854.494 kb on - strand, within SMc00832 at 854.494 kb on - strand, within SMc00832 at 854.494 kb on - strand, within SMc00832 at 854.632 kb on + strand, within SMc00832 at 854.632 kb on + strand, within SMc00832 at 854.687 kb on + strand, within SMc00832 at 854.687 kb on + strand, within SMc00832 at 854.773 kb on + strand at 854.835 kb on + strand at 854.836 kb on - strand at 854.836 kb on - strand at 854.836 kb on - strand at 855.054 kb on + strand, within SMc00833 at 855.054 kb on + strand, within SMc00833 at 855.054 kb on + strand, within SMc00833 at 855.054 kb on + strand, within SMc00833 at 855.055 kb on - strand, within SMc00833 at 855.240 kb on + strand, within SMc00833 at 855.241 kb on - strand, within SMc00833 at 855.307 kb on + strand, within SMc00833 at 855.307 kb on + strand, within SMc00833 at 855.731 kb on - strand, within SMc00833 at 855.843 kb on + strand, within SMc00833 at 855.843 kb on + strand, within SMc00833 at 855.843 kb on + strand, within SMc00833 at 855.843 kb on + strand, within SMc00833
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.05 mg/ml remove 852,733 + SMc00831 0.43 +0.7 852,734 - SMc00831 0.43 +0.5 853,000 + SMc00831 0.73 -0.2 853,000 + SMc00831 0.73 -0.5 853,000 + SMc00831 0.73 -0.4 853,001 - SMc00831 0.73 -0.4 853,001 - SMc00831 0.73 -0.2 853,001 - SMc00831 0.73 +0.4 853,048 + SMc00831 0.78 +0.8 853,048 + SMc00831 0.78 +0.2 853,048 + SMc00831 0.78 +0.6 853,049 - SMc00831 0.78 +0.3 853,049 - SMc00831 0.78 -0.3 853,190 + -0.8 853,190 + +0.2 853,191 - -2.4 853,191 - -0.8 853,191 - -1.7 853,311 - +0.0 853,312 + -1.5 853,313 - +0.6 853,313 - +1.2 853,352 + -0.0 853,352 + -0.5 853,352 + -0.6 853,353 - +0.6 853,353 - +0.2 853,353 - +0.4 853,663 + SMc00832 0.15 +0.1 853,663 + SMc00832 0.15 +0.5 853,663 + SMc00832 0.15 -0.1 853,676 - SMc00832 0.16 +0.2 853,839 + SMc00832 0.27 +0.2 853,873 + SMc00832 0.30 -0.6 853,910 + SMc00832 0.32 +0.6 853,958 - SMc00832 0.36 +1.2 853,958 - SMc00832 0.36 +2.2 853,965 + SMc00832 0.36 +0.6 854,053 + SMc00832 0.42 +0.4 854,454 + SMc00832 0.70 +0.0 854,491 + SMc00832 0.73 +0.1 854,491 + SMc00832 0.73 +0.2 854,492 - SMc00832 0.73 +2.2 854,492 - SMc00832 0.73 +0.3 854,492 - SMc00832 0.73 +1.3 854,493 + SMc00832 0.73 +0.3 854,493 + SMc00832 0.73 +0.6 854,493 + SMc00832 0.73 -0.0 854,493 + SMc00832 0.73 +0.3 854,493 + SMc00832 0.73 -0.6 854,493 + SMc00832 0.73 -0.0 854,493 + SMc00832 0.73 -0.1 854,494 - SMc00832 0.73 +0.4 854,494 - SMc00832 0.73 +0.0 854,494 - SMc00832 0.73 -0.7 854,632 + SMc00832 0.82 +0.4 854,632 + SMc00832 0.82 -0.0 854,687 + SMc00832 0.86 +0.4 854,687 + SMc00832 0.86 -0.6 854,773 + +0.4 854,835 + +0.1 854,836 - +0.1 854,836 - +0.8 854,836 - +0.9 855,054 + SMc00833 0.14 +0.1 855,054 + SMc00833 0.14 +0.1 855,054 + SMc00833 0.14 -0.2 855,054 + SMc00833 0.14 +0.4 855,055 - SMc00833 0.14 +0.3 855,240 + SMc00833 0.30 -1.0 855,241 - SMc00833 0.30 -0.3 855,307 + SMc00833 0.35 +0.2 855,307 + SMc00833 0.35 -0.4 855,731 - SMc00833 0.70 +1.3 855,843 + SMc00833 0.79 +0.8 855,843 + SMc00833 0.79 -0.2 855,843 + SMc00833 0.79 -0.4 855,843 + SMc00833 0.79 +0.3
Or see this region's nucleotide sequence