Experiment: Paraquat dichloride 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00613 and SMc00614 are separated by 9 nucleotides SMc00614 and SMc00615 overlap by 4 nucleotides SMc00615 and SMc00616 are separated by 245 nucleotides
SMc00613: SMc00613 - hypothetical protein, at 1,285,621 to 1,286,205
SMc00613
SMc00614: SMc00614 - phosphoribosylglycinamide formyltransferase, at 1,286,215 to 1,286,877
SMc00614
SMc00615: SMc00615 - phosphoribosylaminoimidazole synthetase, at 1,286,874 to 1,287,944
SMc00615
SMc00616: SMc00616 - permease, at 1,288,190 to 1,289,305
SMc00616
Position (kb)
1286
1287
1288 Strain fitness (log2 ratio)
-1
0
1 at 1285.943 kb on - strand, within SMc00613 at 1286.047 kb on + strand, within SMc00613 at 1286.047 kb on + strand, within SMc00613 at 1286.048 kb on - strand, within SMc00613 at 1286.239 kb on - strand at 1286.266 kb on + strand at 1286.558 kb on + strand, within SMc00614 at 1286.593 kb on - strand, within SMc00614 at 1286.593 kb on - strand, within SMc00614 at 1286.593 kb on - strand, within SMc00614 at 1286.593 kb on - strand, within SMc00614 at 1286.594 kb on + strand, within SMc00614 at 1286.594 kb on + strand, within SMc00614 at 1286.594 kb on + strand, within SMc00614 at 1286.595 kb on - strand, within SMc00614 at 1286.595 kb on - strand, within SMc00614 at 1286.896 kb on + strand at 1286.896 kb on + strand at 1286.896 kb on + strand at 1287.247 kb on + strand, within SMc00615 at 1287.247 kb on + strand, within SMc00615 at 1287.247 kb on + strand, within SMc00615 at 1287.248 kb on - strand, within SMc00615 at 1287.248 kb on - strand, within SMc00615 at 1287.356 kb on - strand, within SMc00615 at 1287.356 kb on - strand, within SMc00615 at 1287.475 kb on + strand, within SMc00615 at 1287.490 kb on + strand, within SMc00615 at 1287.490 kb on + strand, within SMc00615 at 1287.490 kb on + strand, within SMc00615 at 1287.491 kb on - strand, within SMc00615 at 1287.491 kb on - strand, within SMc00615 at 1287.613 kb on + strand, within SMc00615 at 1287.613 kb on + strand, within SMc00615 at 1287.614 kb on - strand, within SMc00615 at 1288.131 kb on + strand at 1288.132 kb on - strand at 1288.132 kb on - strand at 1288.325 kb on + strand, within SMc00616 at 1288.493 kb on + strand, within SMc00616 at 1288.493 kb on + strand, within SMc00616 at 1288.612 kb on + strand, within SMc00616 at 1288.612 kb on + strand, within SMc00616 at 1288.613 kb on - strand, within SMc00616 at 1288.709 kb on + strand, within SMc00616 at 1288.709 kb on + strand, within SMc00616 at 1288.709 kb on + strand, within SMc00616 at 1288.709 kb on + strand, within SMc00616 at 1288.709 kb on + strand, within SMc00616 at 1288.710 kb on - strand, within SMc00616 at 1288.710 kb on - strand, within SMc00616 at 1288.733 kb on - strand, within SMc00616 at 1288.733 kb on - strand, within SMc00616 at 1288.733 kb on - strand, within SMc00616 at 1288.733 kb on - strand, within SMc00616 at 1288.733 kb on - strand, within SMc00616 at 1288.770 kb on - strand, within SMc00616 at 1288.808 kb on - strand, within SMc00616 at 1288.865 kb on + strand, within SMc00616 at 1288.865 kb on + strand, within SMc00616 at 1288.866 kb on - strand, within SMc00616
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.05 mg/ml remove 1,285,943 - SMc00613 0.55 -0.4 1,286,047 + SMc00613 0.73 +0.9 1,286,047 + SMc00613 0.73 +0.2 1,286,048 - SMc00613 0.73 +0.0 1,286,239 - +0.4 1,286,266 + -0.2 1,286,558 + SMc00614 0.52 +0.5 1,286,593 - SMc00614 0.57 -1.5 1,286,593 - SMc00614 0.57 -0.3 1,286,593 - SMc00614 0.57 +0.2 1,286,593 - SMc00614 0.57 +0.3 1,286,594 + SMc00614 0.57 +0.2 1,286,594 + SMc00614 0.57 +0.4 1,286,594 + SMc00614 0.57 -0.2 1,286,595 - SMc00614 0.57 -0.2 1,286,595 - SMc00614 0.57 +0.3 1,286,896 + -0.7 1,286,896 + +0.0 1,286,896 + +0.6 1,287,247 + SMc00615 0.35 +0.9 1,287,247 + SMc00615 0.35 +0.8 1,287,247 + SMc00615 0.35 -1.1 1,287,248 - SMc00615 0.35 +0.0 1,287,248 - SMc00615 0.35 +0.4 1,287,356 - SMc00615 0.45 +0.1 1,287,356 - SMc00615 0.45 +0.1 1,287,475 + SMc00615 0.56 +0.1 1,287,490 + SMc00615 0.58 +0.6 1,287,490 + SMc00615 0.58 -0.1 1,287,490 + SMc00615 0.58 +0.2 1,287,491 - SMc00615 0.58 +0.1 1,287,491 - SMc00615 0.58 +1.1 1,287,613 + SMc00615 0.69 -1.1 1,287,613 + SMc00615 0.69 -0.4 1,287,614 - SMc00615 0.69 -0.3 1,288,131 + +1.2 1,288,132 - +0.2 1,288,132 - +0.1 1,288,325 + SMc00616 0.12 +0.5 1,288,493 + SMc00616 0.27 -0.2 1,288,493 + SMc00616 0.27 +0.0 1,288,612 + SMc00616 0.38 +0.3 1,288,612 + SMc00616 0.38 +0.7 1,288,613 - SMc00616 0.38 +0.2 1,288,709 + SMc00616 0.47 -0.4 1,288,709 + SMc00616 0.47 -0.3 1,288,709 + SMc00616 0.47 +0.1 1,288,709 + SMc00616 0.47 -0.4 1,288,709 + SMc00616 0.47 -0.2 1,288,710 - SMc00616 0.47 +0.5 1,288,710 - SMc00616 0.47 +1.5 1,288,733 - SMc00616 0.49 -0.1 1,288,733 - SMc00616 0.49 -0.0 1,288,733 - SMc00616 0.49 -0.0 1,288,733 - SMc00616 0.49 -0.3 1,288,733 - SMc00616 0.49 +0.0 1,288,770 - SMc00616 0.52 -0.2 1,288,808 - SMc00616 0.55 +0.0 1,288,865 + SMc00616 0.60 +0.0 1,288,865 + SMc00616 0.60 -1.5 1,288,866 - SMc00616 0.61 +0.3
Or see this region's nucleotide sequence