Strain Fitness in Sinorhizobium meliloti 1021 around SMc00577

Experiment: Paraquat dichloride 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00576 and SMc00577 are separated by 3 nucleotidesSMc00577 and SMc00578 are separated by 62 nucleotidesSMc00578 and SMc00579 are separated by 221 nucleotides SMc00576: SMc00576 - hypothetical protein, at 1,246,291 to 1,247,178 SMc00576 SMc00577: SMc00577 - guanylate kinase, at 1,247,182 to 1,247,841 SMc00577 SMc00578: SMc00578 - hypothetical protein, at 1,247,904 to 1,248,032 SMc00578 SMc00579: SMc00579 - dimethyladenosine transferase, at 1,248,254 to 1,249,078 SMc00579 Position (kb) 1247 1248Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1246.203 kb on - strandat 1246.203 kb on - strandat 1246.263 kb on + strandat 1246.425 kb on + strand, within SMc00576at 1246.426 kb on - strand, within SMc00576at 1246.426 kb on - strand, within SMc00576at 1246.611 kb on + strand, within SMc00576at 1246.695 kb on - strand, within SMc00576at 1246.775 kb on + strand, within SMc00576at 1246.775 kb on + strand, within SMc00576at 1246.776 kb on - strand, within SMc00576at 1247.076 kb on + strandat 1248.057 kb on - strandat 1248.111 kb on - strandat 1248.111 kb on - strandat 1248.574 kb on - strand, within SMc00579at 1248.574 kb on - strand, within SMc00579at 1248.574 kb on - strand, within SMc00579

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.05 mg/ml
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1,246,203 - +1.1
1,246,203 - +0.6
1,246,263 + -1.3
1,246,425 + SMc00576 0.15 +0.3
1,246,426 - SMc00576 0.15 +2.0
1,246,426 - SMc00576 0.15 +2.9
1,246,611 + SMc00576 0.36 +0.1
1,246,695 - SMc00576 0.45 +2.0
1,246,775 + SMc00576 0.55 -1.1
1,246,775 + SMc00576 0.55 -1.5
1,246,776 - SMc00576 0.55 +0.4
1,247,076 + +0.3
1,248,057 - -0.0
1,248,111 - +0.8
1,248,111 - -0.7
1,248,574 - SMc00579 0.39 -1.3
1,248,574 - SMc00579 0.39 -2.3
1,248,574 - SMc00579 0.39 -1.6

Or see this region's nucleotide sequence