Experiment: Paraquat dichloride 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00510 and SMc00509 overlap by 1 nucleotides SMc00509 and SMc00508 are separated by 63 nucleotides SMc00508 and SMc00507 are separated by 221 nucleotides SMc00507 and SMc00506 are separated by 73 nucleotides
SMc00510: SMc00510 - hypothetical protein, at 1,902,546 to 1,903,283
SMc00510
SMc00509: SMc00509 - hypothetical protein, at 1,903,283 to 1,903,840
SMc00509
SMc00508: SMc00508 - adenylosuccinate lyase, at 1,903,904 to 1,905,211
SMc00508
SMc00507: SMc00507 - hypothetical protein, at 1,905,433 to 1,905,771
SMc00507
SMc00506: SMc00506 - hypothetical protein, at 1,905,845 to 1,906,654
SMc00506
Position (kb)
1903
1904
1905
1906 Strain fitness (log2 ratio)
-1
0
1 at 1902.933 kb on + strand, within SMc00510 at 1902.933 kb on + strand, within SMc00510 at 1902.933 kb on + strand, within SMc00510 at 1902.934 kb on - strand, within SMc00510 at 1902.934 kb on - strand, within SMc00510 at 1902.972 kb on + strand, within SMc00510 at 1902.973 kb on - strand, within SMc00510 at 1902.973 kb on - strand, within SMc00510 at 1902.973 kb on - strand, within SMc00510 at 1903.093 kb on + strand, within SMc00510 at 1903.093 kb on + strand, within SMc00510 at 1903.456 kb on + strand, within SMc00509 at 1903.457 kb on - strand, within SMc00509 at 1903.646 kb on + strand, within SMc00509 at 1903.659 kb on - strand, within SMc00509 at 1903.734 kb on - strand, within SMc00509 at 1903.767 kb on + strand, within SMc00509 at 1903.767 kb on + strand, within SMc00509 at 1903.767 kb on + strand, within SMc00509 at 1903.768 kb on - strand, within SMc00509 at 1903.792 kb on - strand at 1903.792 kb on - strand at 1903.860 kb on + strand at 1903.860 kb on + strand at 1905.214 kb on - strand at 1905.414 kb on + strand at 1905.415 kb on - strand at 1905.473 kb on - strand, within SMc00507 at 1905.473 kb on - strand, within SMc00507 at 1905.518 kb on + strand, within SMc00507 at 1905.751 kb on + strand at 1905.752 kb on - strand at 1905.755 kb on - strand at 1905.755 kb on - strand at 1905.883 kb on - strand at 1906.196 kb on - strand, within SMc00506
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.05 mg/ml remove 1,902,933 + SMc00510 0.52 -0.7 1,902,933 + SMc00510 0.52 -0.0 1,902,933 + SMc00510 0.52 +1.4 1,902,934 - SMc00510 0.53 +0.2 1,902,934 - SMc00510 0.53 -1.5 1,902,972 + SMc00510 0.58 -0.3 1,902,973 - SMc00510 0.58 +0.2 1,902,973 - SMc00510 0.58 -1.1 1,902,973 - SMc00510 0.58 +0.5 1,903,093 + SMc00510 0.74 -0.1 1,903,093 + SMc00510 0.74 -0.5 1,903,456 + SMc00509 0.31 +0.2 1,903,457 - SMc00509 0.31 -1.0 1,903,646 + SMc00509 0.65 -0.5 1,903,659 - SMc00509 0.67 -0.0 1,903,734 - SMc00509 0.81 +0.1 1,903,767 + SMc00509 0.87 -0.2 1,903,767 + SMc00509 0.87 -0.6 1,903,767 + SMc00509 0.87 -0.0 1,903,768 - SMc00509 0.87 +0.2 1,903,792 - -1.1 1,903,792 - -0.1 1,903,860 + -0.7 1,903,860 + -0.8 1,905,214 - -0.5 1,905,414 + +0.3 1,905,415 - +0.2 1,905,473 - SMc00507 0.12 +0.1 1,905,473 - SMc00507 0.12 +0.1 1,905,518 + SMc00507 0.25 -0.4 1,905,751 + +0.4 1,905,752 - -1.0 1,905,755 - -0.5 1,905,755 - +0.1 1,905,883 - +0.7 1,906,196 - SMc00506 0.43 -0.2
Or see this region's nucleotide sequence