Experiment: Paraquat dichloride 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00391 and SMc00392 are separated by 43 nucleotides SMc00392 and SMc00393 overlap by 1 nucleotides SMc00393 and SMc00394 are separated by 29 nucleotides SMc00394 and SMc00395 are separated by 106 nucleotides SMc00395 and SMc00396 overlap by 4 nucleotides
SMc00391: SMc00391 - hypothetical protein, at 343,024 to 343,218
SMc00391
SMc00392: SMc00392 - hypothetical protein, at 343,262 to 343,504
SMc00392
SMc00393: SMc00393 - hypothetical protein, at 343,504 to 343,929
SMc00393
SMc00394: SMc00394 - GMP synthase, at 343,959 to 345,521
SMc00394
SMc00395: SMc00395 - 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase, at 345,628 to 346,266
SMc00395
SMc00396: SMc00396 - hypothetical protein, at 346,263 to 346,715
SMc00396
Position (kb) 343
344
345
346 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 342.959 kb on + strand at 342.959 kb on + strand at 342.959 kb on + strand at 342.959 kb on + strand at 342.960 kb on - strand at 342.960 kb on - strand at 342.960 kb on - strand at 342.962 kb on + strand at 342.963 kb on - strand at 343.014 kb on + strand at 343.014 kb on + strand at 343.015 kb on - strand at 343.150 kb on + strand, within SMc00391 at 343.232 kb on + strand at 343.232 kb on + strand at 343.242 kb on + strand at 343.243 kb on - strand at 343.499 kb on + strand at 343.499 kb on + strand at 343.510 kb on + strand at 343.511 kb on - strand at 343.511 kb on - strand at 343.511 kb on - strand at 343.920 kb on + strand at 343.920 kb on + strand at 343.921 kb on - strand at 343.955 kb on + strand at 343.955 kb on + strand at 343.956 kb on - strand at 345.560 kb on - strand at 345.560 kb on - strand at 345.588 kb on - strand at 345.711 kb on - strand, within SMc00395 at 345.772 kb on + strand, within SMc00395 at 345.773 kb on - strand, within SMc00395 at 345.855 kb on - strand, within SMc00395 at 345.855 kb on - strand, within SMc00395 at 345.855 kb on - strand, within SMc00395 at 346.132 kb on + strand, within SMc00395 at 346.200 kb on - strand, within SMc00395 at 346.223 kb on + strand at 346.223 kb on + strand at 346.223 kb on + strand at 346.224 kb on - strand at 346.224 kb on - strand at 346.224 kb on - strand at 346.355 kb on - strand, within SMc00396 at 346.507 kb on + strand, within SMc00396 at 346.507 kb on + strand, within SMc00396 at 346.507 kb on + strand, within SMc00396 at 346.508 kb on - strand, within SMc00396
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.05 mg/ml remove 342,959 + +0.1 342,959 + -0.5 342,959 + +0.1 342,959 + +0.3 342,960 - +0.3 342,960 - +0.4 342,960 - -0.4 342,962 + -0.3 342,963 - +0.2 343,014 + +0.5 343,014 + +0.2 343,015 - -0.9 343,150 + SMc00391 0.65 +1.3 343,232 + -1.1 343,232 + +0.1 343,242 + -0.2 343,243 - +0.5 343,499 + -2.1 343,499 + +0.1 343,510 + -0.8 343,511 - -0.9 343,511 - +0.2 343,511 - -0.3 343,920 + -1.2 343,920 + -0.1 343,921 - +1.5 343,955 + +0.6 343,955 + -0.2 343,956 - -0.2 345,560 - +1.2 345,560 - +1.0 345,588 - +3.6 345,711 - SMc00395 0.13 -0.2 345,772 + SMc00395 0.23 +1.8 345,773 - SMc00395 0.23 -0.7 345,855 - SMc00395 0.36 +0.0 345,855 - SMc00395 0.36 -2.0 345,855 - SMc00395 0.36 +0.3 346,132 + SMc00395 0.79 -0.2 346,200 - SMc00395 0.90 +1.1 346,223 + -0.1 346,223 + +0.5 346,223 + +0.4 346,224 - -0.8 346,224 - +0.4 346,224 - -0.7 346,355 - SMc00396 0.20 +0.6 346,507 + SMc00396 0.54 +0.1 346,507 + SMc00396 0.54 +0.3 346,507 + SMc00396 0.54 -0.1 346,508 - SMc00396 0.54 -0.5
Or see this region's nucleotide sequence