Experiment: Paraquat dichloride 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00385 and SMc00386 are separated by 3 nucleotides SMc00386 and SMc00387 are separated by 208 nucleotides SMc00387 and SMc00388 are separated by 97 nucleotides
SMc00385: SMc00385 - hypothetical protein, at 338,537 to 339,010
SMc00385
SMc00386: SMc00386 - hypothetical protein, at 339,014 to 339,364
SMc00386
SMc00387: SMc00387 - aromatic amino acid aminotransferase, at 339,573 to 340,742
SMc00387
SMc00388: SMc00388 - hypothetical protein, at 340,840 to 341,901
SMc00388
Position (kb) 339
340
341 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 338.718 kb on + strand, within SMc00385 at 338.937 kb on + strand, within SMc00385 at 338.943 kb on + strand, within SMc00385 at 338.943 kb on + strand, within SMc00385 at 338.943 kb on + strand, within SMc00385 at 338.943 kb on + strand, within SMc00385 at 338.943 kb on + strand, within SMc00385 at 338.943 kb on + strand, within SMc00385 at 338.944 kb on - strand, within SMc00385 at 338.944 kb on - strand, within SMc00385 at 338.944 kb on - strand, within SMc00385 at 338.944 kb on - strand, within SMc00385 at 339.015 kb on + strand at 339.015 kb on + strand at 339.016 kb on - strand at 339.016 kb on - strand at 339.037 kb on - strand at 339.173 kb on - strand, within SMc00386 at 339.267 kb on + strand, within SMc00386 at 339.268 kb on - strand, within SMc00386 at 339.268 kb on - strand, within SMc00386 at 339.268 kb on - strand, within SMc00386 at 339.268 kb on - strand, within SMc00386 at 339.283 kb on - strand, within SMc00386 at 339.355 kb on + strand at 339.355 kb on + strand at 339.401 kb on + strand at 339.551 kb on + strand at 339.656 kb on + strand at 339.656 kb on + strand at 339.656 kb on + strand at 339.658 kb on + strand at 339.658 kb on + strand at 339.658 kb on + strand at 339.658 kb on + strand at 339.658 kb on + strand at 339.659 kb on - strand at 339.659 kb on - strand at 339.659 kb on - strand at 339.659 kb on - strand at 339.659 kb on - strand at 339.659 kb on - strand at 339.659 kb on - strand at 339.659 kb on - strand at 339.659 kb on - strand at 339.687 kb on - strand at 339.687 kb on - strand at 339.907 kb on + strand, within SMc00387 at 340.114 kb on + strand, within SMc00387 at 340.275 kb on - strand, within SMc00387 at 340.315 kb on + strand, within SMc00387 at 340.549 kb on + strand, within SMc00387 at 340.549 kb on + strand, within SMc00387 at 340.550 kb on - strand, within SMc00387 at 340.550 kb on - strand, within SMc00387 at 340.550 kb on - strand, within SMc00387 at 340.645 kb on - strand at 340.776 kb on + strand at 340.776 kb on + strand at 340.777 kb on - strand at 340.993 kb on + strand, within SMc00388 at 341.053 kb on - strand, within SMc00388 at 341.071 kb on - strand, within SMc00388 at 341.071 kb on - strand, within SMc00388 at 341.071 kb on - strand, within SMc00388 at 341.103 kb on + strand, within SMc00388 at 341.427 kb on + strand, within SMc00388 at 341.429 kb on + strand, within SMc00388 at 341.429 kb on + strand, within SMc00388 at 341.429 kb on + strand, within SMc00388 at 341.429 kb on + strand, within SMc00388 at 341.430 kb on - strand, within SMc00388 at 341.430 kb on - strand, within SMc00388 at 341.435 kb on + strand, within SMc00388 at 341.435 kb on + strand, within SMc00388 at 341.436 kb on - strand, within SMc00388
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.05 mg/ml remove 338,718 + SMc00385 0.38 -0.3 338,937 + SMc00385 0.84 +0.5 338,943 + SMc00385 0.86 -2.3 338,943 + SMc00385 0.86 -0.5 338,943 + SMc00385 0.86 -0.2 338,943 + SMc00385 0.86 +0.1 338,943 + SMc00385 0.86 -0.2 338,943 + SMc00385 0.86 +0.3 338,944 - SMc00385 0.86 -0.7 338,944 - SMc00385 0.86 +1.0 338,944 - SMc00385 0.86 +0.6 338,944 - SMc00385 0.86 -1.4 339,015 + -0.1 339,015 + +1.0 339,016 - -0.2 339,016 - -0.0 339,037 - +0.5 339,173 - SMc00386 0.45 +0.0 339,267 + SMc00386 0.72 -0.7 339,268 - SMc00386 0.72 -0.2 339,268 - SMc00386 0.72 -1.8 339,268 - SMc00386 0.72 -1.0 339,268 - SMc00386 0.72 -0.2 339,283 - SMc00386 0.77 -0.1 339,355 + -0.5 339,355 + -0.4 339,401 + +0.2 339,551 + +0.2 339,656 + -0.3 339,656 + +0.1 339,656 + +0.3 339,658 + +0.2 339,658 + -0.5 339,658 + -0.2 339,658 + +1.8 339,658 + +0.6 339,659 - -0.6 339,659 - +0.1 339,659 - -0.3 339,659 - +0.2 339,659 - +0.6 339,659 - -0.2 339,659 - -0.3 339,659 - +0.3 339,659 - -0.0 339,687 - +0.7 339,687 - +0.4 339,907 + SMc00387 0.29 +0.0 340,114 + SMc00387 0.46 +0.1 340,275 - SMc00387 0.60 -0.7 340,315 + SMc00387 0.63 -0.2 340,549 + SMc00387 0.83 +0.3 340,549 + SMc00387 0.83 -0.3 340,550 - SMc00387 0.84 -0.6 340,550 - SMc00387 0.84 -0.3 340,550 - SMc00387 0.84 +3.5 340,645 - -0.3 340,776 + -0.3 340,776 + -1.7 340,777 - +0.5 340,993 + SMc00388 0.14 -0.2 341,053 - SMc00388 0.20 +0.6 341,071 - SMc00388 0.22 +0.5 341,071 - SMc00388 0.22 +0.2 341,071 - SMc00388 0.22 +1.2 341,103 + SMc00388 0.25 +0.0 341,427 + SMc00388 0.55 +0.4 341,429 + SMc00388 0.55 -0.2 341,429 + SMc00388 0.55 -0.2 341,429 + SMc00388 0.55 +0.1 341,429 + SMc00388 0.55 +0.6 341,430 - SMc00388 0.56 -0.3 341,430 - SMc00388 0.56 -0.7 341,435 + SMc00388 0.56 -0.1 341,435 + SMc00388 0.56 +0.0 341,436 - SMc00388 0.56 +0.2
Or see this region's nucleotide sequence