Strain Fitness in Sinorhizobium meliloti 1021 around SMc00334

Experiment: Paraquat dichloride 0.05 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSMc00333 and SMc00334 overlap by 1 nucleotidesSMc00334 and SMc00335 are separated by 163 nucleotides SMc00333: SMc00333 - 3-phosphoshikimate 1-carboxyvinyltransferase, at 286,978 to 288,345 SMc00333 SMc00334: SMc00334 - cytidylate kinase, at 288,345 to 288,983 SMc00334 SMc00335: SMc00335 - 30S ribosomal protein S1, at 289,147 to 290,853 SMc00335 Position (kb) 288 289Strain fitness (log2 ratio) -3 -2 -1 0 1at 288.421 kb on - strand, within SMc00334at 288.732 kb on + strand, within SMc00334at 288.922 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.05 mg/ml
remove
288,421 - SMc00334 0.12 -1.8
288,732 + SMc00334 0.61 -3.5
288,922 + -2.6

Or see this region's nucleotide sequence