Experiment: Paraquat dichloride 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0831 and SMa0833 are separated by 542 nucleotides SMa0833 and SMa0834 overlap by 4 nucleotides SMa0834 and SMa5036 overlap by 29 nucleotides SMa5036 and SMa0835 are separated by 137 nucleotides SMa0835 and SMa0838 are separated by 150 nucleotides
SMa0831: SMa0831 - NifX iron-molybdenum cluster-binding protein, at 459,663 to 460,163
SMa0831
SMa0833: SMa0833 - hypothetical protein, at 460,706 to 460,846
SMa0833
SMa0834: SMa0834 - FdxB ferredoxin III, at 460,843 to 461,160
SMa0834
SMa5036: SMa5036 - hypothetical protein, at 461,132 to 461,632
SMa5036
SMa0835: SMa0835 - hypothetical protein, at 461,770 to 462,060
SMa0835
SMa0838: SMa0838 - SyrA protein involved in EPS production, at 462,211 to 462,456
SMa0838
Position (kb) 461
462 Strain fitness (log2 ratio) -2
-1
0
1
2 at 460.207 kb on + strand at 460.482 kb on - strand at 460.573 kb on + strand at 460.619 kb on - strand at 460.713 kb on - strand at 460.744 kb on + strand, within SMa0833 at 460.891 kb on + strand, within SMa0834 at 460.892 kb on - strand, within SMa0834 at 460.895 kb on + strand, within SMa0834 at 460.941 kb on + strand, within SMa0834 at 460.962 kb on + strand, within SMa0834 at 460.962 kb on + strand, within SMa0834 at 460.979 kb on + strand, within SMa0834 at 460.989 kb on - strand, within SMa0834 at 461.049 kb on + strand, within SMa0834 at 461.148 kb on - strand at 461.177 kb on + strand at 461.232 kb on + strand, within SMa5036 at 461.233 kb on - strand, within SMa5036 at 461.263 kb on + strand, within SMa5036 at 461.278 kb on + strand, within SMa5036 at 461.279 kb on - strand, within SMa5036 at 461.286 kb on + strand, within SMa5036 at 461.306 kb on - strand, within SMa5036 at 461.404 kb on - strand, within SMa5036 at 461.618 kb on - strand at 461.682 kb on - strand at 461.746 kb on + strand at 461.746 kb on + strand at 461.866 kb on - strand, within SMa0835 at 461.942 kb on - strand, within SMa0835 at 461.942 kb on - strand, within SMa0835 at 461.942 kb on - strand, within SMa0835 at 462.019 kb on - strand, within SMa0835 at 462.036 kb on + strand at 462.036 kb on + strand at 462.037 kb on - strand at 462.056 kb on + strand at 462.057 kb on - strand at 462.127 kb on + strand at 462.234 kb on - strand at 462.240 kb on - strand, within SMa0838 at 462.341 kb on + strand, within SMa0838 at 462.342 kb on - strand, within SMa0838 at 462.508 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.05 mg/ml remove 460,207 + +0.3 460,482 - -0.5 460,573 + +0.5 460,619 - -0.8 460,713 - +0.4 460,744 + SMa0833 0.27 +0.5 460,891 + SMa0834 0.15 +0.5 460,892 - SMa0834 0.15 +1.5 460,895 + SMa0834 0.16 +1.0 460,941 + SMa0834 0.31 +0.5 460,962 + SMa0834 0.37 +1.0 460,962 + SMa0834 0.37 -0.0 460,979 + SMa0834 0.43 +2.0 460,989 - SMa0834 0.46 +0.5 461,049 + SMa0834 0.65 +0.2 461,148 - +0.0 461,177 + -1.6 461,232 + SMa5036 0.20 +1.2 461,233 - SMa5036 0.20 +0.3 461,263 + SMa5036 0.26 +0.9 461,278 + SMa5036 0.29 +1.4 461,279 - SMa5036 0.29 +0.8 461,286 + SMa5036 0.31 +0.8 461,306 - SMa5036 0.35 -2.4 461,404 - SMa5036 0.54 +0.3 461,618 - -0.0 461,682 - +0.2 461,746 + +0.9 461,746 + +0.0 461,866 - SMa0835 0.33 -0.3 461,942 - SMa0835 0.59 -0.3 461,942 - SMa0835 0.59 -0.1 461,942 - SMa0835 0.59 +0.6 462,019 - SMa0835 0.86 +0.5 462,036 + +1.6 462,036 + +1.7 462,037 - +0.3 462,056 + +2.1 462,057 - +0.4 462,127 + +0.5 462,234 - -0.1 462,240 - SMa0838 0.12 +0.9 462,341 + SMa0838 0.53 +0.3 462,342 - SMa0838 0.53 -0.3 462,508 - -1.2
Or see this region's nucleotide sequence