Experiment: Paraquat dichloride 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1344 and SMa1345 overlap by 1 nucleotides SMa1345 and SMa1347 are separated by 108 nucleotides
SMa1344: SMa1344 - ABC transporter ATP-binding protein, at 734,850 to 735,959
SMa1344
SMa1345: SMa1345 - ABC transporter ATP-binding protein, at 735,959 to 737,035
SMa1345
SMa1347: SMa1347 - dehydrogenase, at 737,144 to 738,118
SMa1347
Position (kb) 735
736
737
738 Strain fitness (log2 ratio) -2
-1
0
1 at 734.987 kb on - strand, within SMa1344 at 735.035 kb on - strand, within SMa1344 at 735.058 kb on + strand, within SMa1344 at 735.058 kb on + strand, within SMa1344 at 735.058 kb on + strand, within SMa1344 at 735.088 kb on + strand, within SMa1344 at 735.088 kb on + strand, within SMa1344 at 735.134 kb on + strand, within SMa1344 at 735.414 kb on + strand, within SMa1344 at 735.414 kb on + strand, within SMa1344 at 735.414 kb on + strand, within SMa1344 at 735.414 kb on + strand, within SMa1344 at 735.415 kb on - strand, within SMa1344 at 735.415 kb on - strand, within SMa1344 at 735.415 kb on - strand, within SMa1344 at 735.419 kb on - strand, within SMa1344 at 735.419 kb on - strand, within SMa1344 at 735.419 kb on - strand, within SMa1344 at 735.712 kb on + strand, within SMa1344 at 735.713 kb on - strand, within SMa1344 at 735.777 kb on - strand, within SMa1344 at 735.809 kb on - strand, within SMa1344 at 735.895 kb on + strand at 735.896 kb on - strand at 735.896 kb on - strand at 735.896 kb on - strand at 736.208 kb on + strand, within SMa1345 at 736.227 kb on - strand, within SMa1345 at 736.228 kb on + strand, within SMa1345 at 736.628 kb on + strand, within SMa1345 at 736.628 kb on + strand, within SMa1345 at 736.628 kb on + strand, within SMa1345 at 736.628 kb on + strand, within SMa1345 at 736.628 kb on + strand, within SMa1345 at 736.629 kb on - strand, within SMa1345 at 736.629 kb on - strand, within SMa1345 at 736.629 kb on - strand, within SMa1345 at 736.848 kb on + strand, within SMa1345 at 736.849 kb on - strand, within SMa1345 at 736.894 kb on + strand, within SMa1345 at 736.900 kb on + strand, within SMa1345 at 736.900 kb on + strand, within SMa1345 at 736.901 kb on - strand, within SMa1345 at 737.145 kb on + strand at 737.322 kb on + strand, within SMa1347 at 737.322 kb on + strand, within SMa1347 at 737.322 kb on + strand, within SMa1347 at 737.323 kb on - strand, within SMa1347 at 737.323 kb on - strand, within SMa1347 at 737.350 kb on + strand, within SMa1347 at 737.351 kb on - strand at 737.351 kb on - strand, within SMa1347 at 737.637 kb on + strand, within SMa1347 at 737.740 kb on + strand, within SMa1347 at 737.740 kb on + strand, within SMa1347 at 737.773 kb on + strand, within SMa1347 at 737.925 kb on - strand, within SMa1347 at 737.943 kb on - strand, within SMa1347
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.05 mg/ml remove 734,987 - SMa1344 0.12 +0.8 735,035 - SMa1344 0.17 +0.4 735,058 + SMa1344 0.19 -0.0 735,058 + SMa1344 0.19 -0.1 735,058 + SMa1344 0.19 +0.4 735,088 + SMa1344 0.21 -1.2 735,088 + SMa1344 0.21 +0.6 735,134 + SMa1344 0.26 +0.2 735,414 + SMa1344 0.51 +1.1 735,414 + SMa1344 0.51 +0.2 735,414 + SMa1344 0.51 -0.9 735,414 + SMa1344 0.51 -2.2 735,415 - SMa1344 0.51 -0.8 735,415 - SMa1344 0.51 -0.1 735,415 - SMa1344 0.51 -1.1 735,419 - SMa1344 0.51 -0.3 735,419 - SMa1344 0.51 -0.0 735,419 - SMa1344 0.51 +0.5 735,712 + SMa1344 0.78 +0.8 735,713 - SMa1344 0.78 +0.8 735,777 - SMa1344 0.84 +1.5 735,809 - SMa1344 0.86 +0.6 735,895 + +0.2 735,896 - -0.0 735,896 - +0.2 735,896 - +1.2 736,208 + SMa1345 0.23 -0.6 736,227 - SMa1345 0.25 +0.0 736,228 + SMa1345 0.25 +0.1 736,628 + SMa1345 0.62 -0.9 736,628 + SMa1345 0.62 +0.4 736,628 + SMa1345 0.62 -0.8 736,628 + SMa1345 0.62 -0.8 736,628 + SMa1345 0.62 -0.2 736,629 - SMa1345 0.62 -1.2 736,629 - SMa1345 0.62 -1.1 736,629 - SMa1345 0.62 +0.3 736,848 + SMa1345 0.83 -2.4 736,849 - SMa1345 0.83 -0.5 736,894 + SMa1345 0.87 -0.5 736,900 + SMa1345 0.87 -0.1 736,900 + SMa1345 0.87 +0.0 736,901 - SMa1345 0.87 -0.4 737,145 + -0.0 737,322 + SMa1347 0.18 +0.3 737,322 + SMa1347 0.18 -0.0 737,322 + SMa1347 0.18 -1.0 737,323 - SMa1347 0.18 -0.7 737,323 - SMa1347 0.18 +1.5 737,350 + SMa1347 0.21 +1.0 737,351 - -0.6 737,351 - SMa1347 0.21 -0.1 737,637 + SMa1347 0.51 +0.2 737,740 + SMa1347 0.61 +0.0 737,740 + SMa1347 0.61 -0.9 737,773 + SMa1347 0.65 +0.4 737,925 - SMa1347 0.80 +1.4 737,943 - SMa1347 0.82 -0.7
Or see this region's nucleotide sequence