Experiment: Paraquat dichloride 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1050 and SMa1052 overlap by 4 nucleotides SMa1052 and SMa1053 overlap by 4 nucleotides SMa1053 and SMa1056 overlap by 4 nucleotides SMa1056 and SMa1057 overlap by 10 nucleotides
SMa1050: SMa1050 - hypothetical protein, at 576,097 to 576,642
SMa1050
SMa1052: SMa1052 - hypothetical protein, at 576,639 to 577,070
SMa1052
SMa1053: SMa1053 - hypothetical protein, at 577,067 to 577,477
SMa1053
SMa1056: SMa1056 - transcriptional regulator, at 577,474 to 577,821
SMa1056
SMa1057: SMa1057 - hypothetical protein, at 577,812 to 579,110
SMa1057
Position (kb) 577
578 Strain fitness (log2 ratio) -1
0
1 at 576.537 kb on - strand, within SMa1050 at 576.702 kb on + strand, within SMa1052 at 577.317 kb on - strand, within SMa1053 at 577.387 kb on + strand, within SMa1053 at 577.636 kb on + strand, within SMa1056 at 577.637 kb on - strand, within SMa1056 at 577.833 kb on + strand at 577.834 kb on - strand at 578.252 kb on + strand, within SMa1057 at 578.253 kb on - strand, within SMa1057 at 578.253 kb on - strand, within SMa1057 at 578.253 kb on - strand, within SMa1057 at 578.253 kb on - strand, within SMa1057 at 578.253 kb on - strand, within SMa1057 at 578.253 kb on - strand, within SMa1057 at 578.297 kb on + strand, within SMa1057 at 578.363 kb on + strand, within SMa1057 at 578.412 kb on - strand, within SMa1057 at 578.412 kb on - strand, within SMa1057 at 578.443 kb on + strand, within SMa1057 at 578.521 kb on + strand, within SMa1057 at 578.522 kb on - strand at 578.522 kb on - strand, within SMa1057 at 578.632 kb on + strand, within SMa1057 at 578.632 kb on + strand, within SMa1057 at 578.633 kb on - strand, within SMa1057 at 578.633 kb on - strand, within SMa1057 at 578.800 kb on + strand, within SMa1057 at 578.801 kb on - strand, within SMa1057
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.05 mg/ml remove 576,537 - SMa1050 0.81 -0.1 576,702 + SMa1052 0.15 -0.5 577,317 - SMa1053 0.61 -1.6 577,387 + SMa1053 0.78 -0.0 577,636 + SMa1056 0.47 +0.8 577,637 - SMa1056 0.47 -0.9 577,833 + -0.2 577,834 - -0.2 578,252 + SMa1057 0.34 +0.7 578,253 - SMa1057 0.34 +0.7 578,253 - SMa1057 0.34 -0.6 578,253 - SMa1057 0.34 -0.7 578,253 - SMa1057 0.34 +0.8 578,253 - SMa1057 0.34 +1.0 578,253 - SMa1057 0.34 +1.2 578,297 + SMa1057 0.37 -0.5 578,363 + SMa1057 0.42 +1.2 578,412 - SMa1057 0.46 -0.3 578,412 - SMa1057 0.46 -0.0 578,443 + SMa1057 0.49 -1.3 578,521 + SMa1057 0.55 -0.6 578,522 - +0.4 578,522 - SMa1057 0.55 +0.1 578,632 + SMa1057 0.63 -0.2 578,632 + SMa1057 0.63 -0.2 578,633 - SMa1057 0.63 +0.3 578,633 - SMa1057 0.63 +0.4 578,800 + SMa1057 0.76 +0.8 578,801 - SMa1057 0.76 +0.5
Or see this region's nucleotide sequence