Experiment: Paraquat dichloride 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0864 and SMa0866 are separated by 7 nucleotides SMa0866 and SMa0868 are separated by 14 nucleotides SMa0868 and SMa0869 overlap by 4 nucleotides
SMa0864: SMa0864 - nodulation factor exporter subunit NodI, at 477,934 to 479,001
SMa0864
SMa0866: SMa0866 - NodC N-acetylglucosaminyltransferase, at 479,009 to 480,289
SMa0866
SMa0868: SMa0868 - NodB chitooligosaccharide deacetylase, at 480,304 to 480,957
SMa0868
SMa0869: SMa0869 - acyltransferase, at 480,954 to 481,544
SMa0869
Position (kb) 479
480
481 Strain fitness (log2 ratio) -1
0
1 at 478.037 kb on - strand at 478.037 kb on - strand at 478.109 kb on - strand, within SMa0864 at 478.109 kb on - strand, within SMa0864 at 478.120 kb on + strand, within SMa0864 at 478.142 kb on + strand, within SMa0864 at 478.151 kb on - strand, within SMa0864 at 478.264 kb on - strand, within SMa0864 at 478.264 kb on - strand, within SMa0864 at 478.264 kb on - strand, within SMa0864 at 478.582 kb on + strand, within SMa0864 at 478.583 kb on - strand, within SMa0864 at 478.604 kb on - strand, within SMa0864 at 478.701 kb on + strand, within SMa0864 at 478.805 kb on + strand, within SMa0864 at 479.104 kb on - strand at 479.135 kb on - strand at 479.146 kb on - strand, within SMa0866 at 479.162 kb on + strand, within SMa0866 at 479.162 kb on + strand, within SMa0866 at 479.231 kb on + strand, within SMa0866 at 479.304 kb on - strand, within SMa0866 at 479.470 kb on - strand, within SMa0866 at 479.505 kb on - strand, within SMa0866 at 479.521 kb on - strand, within SMa0866 at 479.650 kb on - strand, within SMa0866 at 479.653 kb on + strand, within SMa0866 at 479.654 kb on - strand, within SMa0866 at 479.677 kb on + strand, within SMa0866 at 479.677 kb on + strand, within SMa0866 at 479.678 kb on - strand, within SMa0866 at 479.983 kb on - strand, within SMa0866 at 479.993 kb on + strand, within SMa0866 at 480.039 kb on + strand, within SMa0866 at 480.039 kb on + strand, within SMa0866 at 480.205 kb on - strand at 480.206 kb on + strand at 480.246 kb on + strand at 480.286 kb on - strand at 480.402 kb on + strand, within SMa0868 at 480.538 kb on + strand, within SMa0868 at 480.538 kb on + strand, within SMa0868 at 480.538 kb on + strand, within SMa0868 at 480.539 kb on - strand, within SMa0868 at 480.596 kb on + strand, within SMa0868 at 480.598 kb on - strand, within SMa0868 at 480.786 kb on - strand, within SMa0868 at 480.822 kb on - strand, within SMa0868 at 480.889 kb on + strand, within SMa0868 at 480.889 kb on + strand, within SMa0868 at 480.891 kb on + strand, within SMa0868 at 480.891 kb on + strand, within SMa0868 at 480.892 kb on - strand at 480.937 kb on + strand at 480.938 kb on - strand at 480.942 kb on - strand at 480.958 kb on - strand at 481.138 kb on + strand, within SMa0869 at 481.273 kb on + strand, within SMa0869 at 481.273 kb on + strand, within SMa0869 at 481.276 kb on - strand, within SMa0869
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.05 mg/ml remove 478,037 - +0.5 478,037 - +0.7 478,109 - SMa0864 0.16 -0.9 478,109 - SMa0864 0.16 -0.9 478,120 + SMa0864 0.17 +0.4 478,142 + SMa0864 0.19 +0.3 478,151 - SMa0864 0.20 +0.3 478,264 - SMa0864 0.31 -0.9 478,264 - SMa0864 0.31 +0.3 478,264 - SMa0864 0.31 -1.4 478,582 + SMa0864 0.61 +0.4 478,583 - SMa0864 0.61 +0.3 478,604 - SMa0864 0.63 -1.5 478,701 + SMa0864 0.72 +0.7 478,805 + SMa0864 0.82 -0.2 479,104 - +0.9 479,135 - +0.3 479,146 - SMa0866 0.11 +0.4 479,162 + SMa0866 0.12 +0.1 479,162 + SMa0866 0.12 +0.9 479,231 + SMa0866 0.17 +0.2 479,304 - SMa0866 0.23 +0.6 479,470 - SMa0866 0.36 +0.5 479,505 - SMa0866 0.39 -0.8 479,521 - SMa0866 0.40 -0.0 479,650 - SMa0866 0.50 +0.3 479,653 + SMa0866 0.50 +0.7 479,654 - SMa0866 0.50 +0.1 479,677 + SMa0866 0.52 +1.1 479,677 + SMa0866 0.52 +0.1 479,678 - SMa0866 0.52 +0.3 479,983 - SMa0866 0.76 +0.1 479,993 + SMa0866 0.77 +1.3 480,039 + SMa0866 0.80 -0.4 480,039 + SMa0866 0.80 +0.1 480,205 - +0.8 480,206 + -0.8 480,246 + +0.4 480,286 - +0.9 480,402 + SMa0868 0.15 +1.0 480,538 + SMa0868 0.36 -0.1 480,538 + SMa0868 0.36 +0.4 480,538 + SMa0868 0.36 +0.5 480,539 - SMa0868 0.36 +0.8 480,596 + SMa0868 0.45 -1.5 480,598 - SMa0868 0.45 +0.2 480,786 - SMa0868 0.74 -0.5 480,822 - SMa0868 0.79 +0.9 480,889 + SMa0868 0.89 +1.0 480,889 + SMa0868 0.89 +0.4 480,891 + SMa0868 0.90 +0.5 480,891 + SMa0868 0.90 +0.9 480,892 - +1.1 480,937 + -0.1 480,938 - +0.1 480,942 - -0.0 480,958 - +1.0 481,138 + SMa0869 0.31 +0.2 481,273 + SMa0869 0.54 +0.3 481,273 + SMa0869 0.54 +1.0 481,276 - SMa0869 0.54 +0.2
Or see this region's nucleotide sequence