Experiment: Paraquat dichloride 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0707 and SMa0708 overlap by 4 nucleotides SMa0708 and SMa0709 are separated by 32 nucleotides
SMa0707: SMa0707 - dihydrodipicolinate synthase, at 381,959 to 382,921
SMa0707
SMa0708: SMa0708 - enolase, at 382,918 to 384,087
SMa0708
SMa0709: SMa0709 - ABC transporter substrate-binding protein, at 384,120 to 385,385
SMa0709
Position (kb) 382
383
384
385 Strain fitness (log2 ratio) -2
-1
0
1
2 at 381.945 kb on + strand at 381.945 kb on + strand at 381.946 kb on - strand at 381.946 kb on - strand at 381.946 kb on - strand at 381.946 kb on - strand at 382.484 kb on + strand, within SMa0707 at 382.552 kb on + strand, within SMa0707 at 382.552 kb on + strand, within SMa0707 at 382.552 kb on + strand, within SMa0707 at 382.552 kb on + strand, within SMa0707 at 382.601 kb on + strand, within SMa0707 at 382.674 kb on - strand, within SMa0707 at 382.722 kb on + strand, within SMa0707 at 382.722 kb on + strand, within SMa0707 at 382.722 kb on + strand, within SMa0707 at 382.748 kb on + strand, within SMa0707 at 382.809 kb on + strand, within SMa0707 at 382.809 kb on + strand, within SMa0707 at 382.810 kb on - strand, within SMa0707 at 382.810 kb on - strand, within SMa0707 at 382.978 kb on + strand at 382.979 kb on - strand at 382.979 kb on - strand at 383.024 kb on - strand at 383.028 kb on - strand at 383.028 kb on - strand at 383.054 kb on - strand, within SMa0708 at 383.233 kb on + strand, within SMa0708 at 383.233 kb on + strand, within SMa0708 at 383.258 kb on - strand, within SMa0708 at 383.259 kb on + strand, within SMa0708 at 383.272 kb on + strand, within SMa0708 at 383.273 kb on - strand, within SMa0708 at 383.386 kb on + strand, within SMa0708 at 383.386 kb on + strand, within SMa0708 at 383.387 kb on - strand, within SMa0708 at 383.387 kb on - strand, within SMa0708 at 383.387 kb on - strand, within SMa0708 at 383.388 kb on + strand, within SMa0708 at 383.389 kb on - strand, within SMa0708 at 383.389 kb on - strand, within SMa0708 at 383.389 kb on - strand, within SMa0708 at 383.389 kb on - strand, within SMa0708 at 383.739 kb on + strand, within SMa0708 at 383.739 kb on + strand, within SMa0708 at 383.739 kb on + strand, within SMa0708 at 383.739 kb on + strand, within SMa0708 at 383.740 kb on - strand, within SMa0708 at 383.796 kb on + strand, within SMa0708 at 383.797 kb on - strand, within SMa0708 at 383.830 kb on + strand, within SMa0708 at 383.831 kb on - strand, within SMa0708 at 383.831 kb on - strand, within SMa0708 at 384.013 kb on + strand at 384.303 kb on - strand, within SMa0709 at 384.336 kb on + strand, within SMa0709 at 384.383 kb on + strand, within SMa0709 at 384.425 kb on + strand, within SMa0709 at 384.518 kb on + strand, within SMa0709 at 384.543 kb on + strand, within SMa0709 at 384.544 kb on - strand, within SMa0709 at 384.565 kb on - strand, within SMa0709 at 384.612 kb on + strand, within SMa0709 at 384.720 kb on + strand, within SMa0709 at 384.720 kb on + strand, within SMa0709 at 384.721 kb on - strand, within SMa0709 at 384.721 kb on - strand, within SMa0709 at 384.721 kb on - strand, within SMa0709 at 384.724 kb on + strand, within SMa0709 at 384.725 kb on - strand, within SMa0709 at 384.725 kb on - strand, within SMa0709 at 384.725 kb on - strand, within SMa0709 at 384.725 kb on - strand, within SMa0709 at 384.741 kb on + strand, within SMa0709 at 384.793 kb on + strand, within SMa0709 at 384.793 kb on + strand, within SMa0709 at 384.793 kb on + strand, within SMa0709 at 384.794 kb on - strand, within SMa0709 at 384.971 kb on + strand, within SMa0709
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.05 mg/ml remove 381,945 + +0.6 381,945 + +1.3 381,946 - +2.5 381,946 - -0.4 381,946 - -0.3 381,946 - -0.6 382,484 + SMa0707 0.55 -0.2 382,552 + SMa0707 0.62 -1.2 382,552 + SMa0707 0.62 +0.0 382,552 + SMa0707 0.62 -0.7 382,552 + SMa0707 0.62 +0.2 382,601 + SMa0707 0.67 +0.5 382,674 - SMa0707 0.74 +0.1 382,722 + SMa0707 0.79 -0.3 382,722 + SMa0707 0.79 +0.2 382,722 + SMa0707 0.79 -0.8 382,748 + SMa0707 0.82 -0.7 382,809 + SMa0707 0.88 +0.3 382,809 + SMa0707 0.88 -0.3 382,810 - SMa0707 0.88 +0.7 382,810 - SMa0707 0.88 +0.7 382,978 + +0.0 382,979 - +0.6 382,979 - -0.7 383,024 - -0.1 383,028 - -0.1 383,028 - +1.2 383,054 - SMa0708 0.12 -0.4 383,233 + SMa0708 0.27 +0.2 383,233 + SMa0708 0.27 -1.5 383,258 - SMa0708 0.29 +0.5 383,259 + SMa0708 0.29 -0.5 383,272 + SMa0708 0.30 -0.3 383,273 - SMa0708 0.30 -0.3 383,386 + SMa0708 0.40 -0.4 383,386 + SMa0708 0.40 -0.7 383,387 - SMa0708 0.40 -0.6 383,387 - SMa0708 0.40 +0.0 383,387 - SMa0708 0.40 -0.4 383,388 + SMa0708 0.40 -0.6 383,389 - SMa0708 0.40 +0.4 383,389 - SMa0708 0.40 -0.1 383,389 - SMa0708 0.40 -0.3 383,389 - SMa0708 0.40 -1.6 383,739 + SMa0708 0.70 -0.9 383,739 + SMa0708 0.70 -0.3 383,739 + SMa0708 0.70 -0.5 383,739 + SMa0708 0.70 +0.8 383,740 - SMa0708 0.70 -0.0 383,796 + SMa0708 0.75 -1.2 383,797 - SMa0708 0.75 -0.3 383,830 + SMa0708 0.78 +0.4 383,831 - SMa0708 0.78 -0.3 383,831 - SMa0708 0.78 -0.9 384,013 + +0.4 384,303 - SMa0709 0.14 +0.5 384,336 + SMa0709 0.17 -1.8 384,383 + SMa0709 0.21 -0.3 384,425 + SMa0709 0.24 +0.8 384,518 + SMa0709 0.31 -0.0 384,543 + SMa0709 0.33 -0.0 384,544 - SMa0709 0.33 -0.2 384,565 - SMa0709 0.35 +0.0 384,612 + SMa0709 0.39 +0.3 384,720 + SMa0709 0.47 +0.0 384,720 + SMa0709 0.47 +0.2 384,721 - SMa0709 0.47 +0.6 384,721 - SMa0709 0.47 -0.6 384,721 - SMa0709 0.47 +0.6 384,724 + SMa0709 0.48 +0.8 384,725 - SMa0709 0.48 -0.1 384,725 - SMa0709 0.48 +0.9 384,725 - SMa0709 0.48 +0.0 384,725 - SMa0709 0.48 -0.5 384,741 + SMa0709 0.49 -0.5 384,793 + SMa0709 0.53 -0.6 384,793 + SMa0709 0.53 +0.5 384,793 + SMa0709 0.53 -1.0 384,794 - SMa0709 0.53 -0.9 384,971 + SMa0709 0.67 +1.0
Or see this region's nucleotide sequence