Experiment: Paraquat dichloride 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0617 and SMa0620 are separated by 218 nucleotides SMa0620 and SMa0621 are separated by 2 nucleotides
SMa0617: SMa0617 - FixP3 Diheme c-type cytochrome, at 329,568 to 330,449
SMa0617
SMa0620: SMa0620 - hypothetical protein, at 330,668 to 331,474
SMa0620
SMa0621: SMa0621 - FixI2 E1-E2 type cation ATPase, at 331,477 to 333,744
SMa0621
Position (kb) 330
331
332 Strain fitness (log2 ratio) -2
-1
0
1
2 at 329.745 kb on + strand, within SMa0617 at 329.745 kb on + strand, within SMa0617 at 329.745 kb on + strand, within SMa0617 at 329.746 kb on - strand, within SMa0617 at 329.747 kb on + strand, within SMa0617 at 329.747 kb on + strand, within SMa0617 at 329.843 kb on + strand, within SMa0617 at 329.844 kb on - strand, within SMa0617 at 329.863 kb on + strand, within SMa0617 at 329.863 kb on + strand, within SMa0617 at 329.863 kb on + strand, within SMa0617 at 329.864 kb on - strand, within SMa0617 at 329.970 kb on + strand, within SMa0617 at 329.970 kb on + strand, within SMa0617 at 329.970 kb on + strand, within SMa0617 at 330.141 kb on + strand, within SMa0617 at 330.142 kb on - strand, within SMa0617 at 330.142 kb on - strand, within SMa0617 at 330.168 kb on + strand, within SMa0617 at 330.307 kb on - strand, within SMa0617 at 330.327 kb on - strand, within SMa0617 at 330.362 kb on + strand at 330.362 kb on + strand at 330.363 kb on - strand at 330.363 kb on - strand at 330.417 kb on + strand at 330.417 kb on + strand at 330.546 kb on - strand at 330.546 kb on - strand at 330.667 kb on + strand at 330.667 kb on + strand at 330.667 kb on + strand at 330.668 kb on - strand at 330.717 kb on + strand at 330.717 kb on + strand at 330.717 kb on + strand at 330.810 kb on - strand, within SMa0620 at 330.831 kb on - strand, within SMa0620 at 330.831 kb on - strand, within SMa0620 at 330.925 kb on + strand, within SMa0620 at 330.925 kb on + strand, within SMa0620 at 330.960 kb on - strand, within SMa0620 at 331.109 kb on + strand, within SMa0620 at 331.110 kb on - strand, within SMa0620 at 331.153 kb on + strand, within SMa0620 at 331.371 kb on + strand, within SMa0620 at 331.457 kb on + strand at 331.495 kb on - strand at 331.495 kb on - strand at 331.495 kb on - strand at 331.774 kb on + strand, within SMa0621 at 331.972 kb on + strand, within SMa0621 at 331.991 kb on - strand, within SMa0621 at 332.084 kb on - strand, within SMa0621
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.05 mg/ml remove 329,745 + SMa0617 0.20 -0.3 329,745 + SMa0617 0.20 -1.3 329,745 + SMa0617 0.20 -0.3 329,746 - SMa0617 0.20 +0.3 329,747 + SMa0617 0.20 +1.6 329,747 + SMa0617 0.20 -0.4 329,843 + SMa0617 0.31 +0.3 329,844 - SMa0617 0.31 +1.6 329,863 + SMa0617 0.33 -0.9 329,863 + SMa0617 0.33 -1.0 329,863 + SMa0617 0.33 +0.1 329,864 - SMa0617 0.34 -0.1 329,970 + SMa0617 0.46 +0.1 329,970 + SMa0617 0.46 -0.0 329,970 + SMa0617 0.46 -0.2 330,141 + SMa0617 0.65 +1.6 330,142 - SMa0617 0.65 -1.3 330,142 - SMa0617 0.65 -0.1 330,168 + SMa0617 0.68 +0.2 330,307 - SMa0617 0.84 +0.9 330,327 - SMa0617 0.86 -0.1 330,362 + +0.2 330,362 + +0.4 330,363 - -0.3 330,363 - +0.9 330,417 + -0.2 330,417 + -0.6 330,546 - +0.7 330,546 - +0.1 330,667 + -0.3 330,667 + +0.1 330,667 + -0.1 330,668 - -1.6 330,717 + -0.3 330,717 + -1.8 330,717 + +0.2 330,810 - SMa0620 0.18 +0.1 330,831 - SMa0620 0.20 +1.3 330,831 - SMa0620 0.20 -0.4 330,925 + SMa0620 0.32 -0.2 330,925 + SMa0620 0.32 -0.3 330,960 - SMa0620 0.36 +0.7 331,109 + SMa0620 0.55 -0.7 331,110 - SMa0620 0.55 +1.6 331,153 + SMa0620 0.60 +0.1 331,371 + SMa0620 0.87 +0.2 331,457 + +1.9 331,495 - +0.0 331,495 - +0.9 331,495 - -0.4 331,774 + SMa0621 0.13 -1.3 331,972 + SMa0621 0.22 +0.2 331,991 - SMa0621 0.23 -0.3 332,084 - SMa0621 0.27 -2.0
Or see this region's nucleotide sequence