Experiment: Paraquat dichloride 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0581 and SMa0583 are separated by 13 nucleotides SMa0583 and SMa0585 are separated by 62 nucleotides
SMa0581: SMa0581 - nitrate ABC transporter ATP-binding protein, at 310,425 to 311,225
SMa0581
SMa0583: SMa0583 - nitrate ABC transporter permease, at 311,239 to 312,132
SMa0583
SMa0585: SMa0585 - nitrate ABC transporter substrate-binding protein, at 312,195 to 313,487
SMa0585
Position (kb) 311
312
313 Strain fitness (log2 ratio) -2
-1
0
1 at 310.353 kb on + strand at 310.353 kb on + strand at 310.353 kb on + strand at 310.354 kb on - strand at 310.358 kb on + strand at 310.495 kb on + strand at 310.495 kb on + strand at 310.496 kb on - strand at 310.652 kb on + strand, within SMa0581 at 311.069 kb on + strand, within SMa0581 at 311.069 kb on + strand at 311.069 kb on - strand, within SMa0581 at 311.070 kb on - strand, within SMa0581 at 311.212 kb on + strand at 311.213 kb on - strand at 311.213 kb on - strand at 311.322 kb on - strand at 311.322 kb on - strand at 311.322 kb on - strand at 311.322 kb on - strand at 311.455 kb on - strand, within SMa0583 at 311.471 kb on + strand, within SMa0583 at 311.471 kb on + strand, within SMa0583 at 311.472 kb on - strand, within SMa0583 at 311.864 kb on + strand, within SMa0583 at 311.864 kb on + strand, within SMa0583 at 311.865 kb on - strand, within SMa0583 at 312.230 kb on - strand at 312.414 kb on - strand, within SMa0585 at 312.455 kb on - strand, within SMa0585 at 312.455 kb on - strand, within SMa0585 at 312.527 kb on - strand, within SMa0585 at 312.527 kb on - strand, within SMa0585 at 312.527 kb on - strand, within SMa0585 at 312.527 kb on - strand, within SMa0585 at 312.764 kb on - strand, within SMa0585 at 312.941 kb on + strand, within SMa0585 at 312.941 kb on + strand, within SMa0585 at 312.942 kb on - strand, within SMa0585
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.05 mg/ml remove 310,353 + +0.1 310,353 + +0.2 310,353 + +0.0 310,354 - -0.3 310,358 + -0.5 310,495 + -1.2 310,495 + +1.1 310,496 - -0.1 310,652 + SMa0581 0.28 -0.0 311,069 + SMa0581 0.80 -0.3 311,069 + +1.0 311,069 - SMa0581 0.80 +0.5 311,070 - SMa0581 0.81 -0.8 311,212 + +0.8 311,213 - +0.1 311,213 - +0.4 311,322 - +0.2 311,322 - -0.1 311,322 - -1.2 311,322 - +0.5 311,455 - SMa0583 0.24 -0.0 311,471 + SMa0583 0.26 -0.4 311,471 + SMa0583 0.26 -0.4 311,472 - SMa0583 0.26 -0.7 311,864 + SMa0583 0.70 -1.2 311,864 + SMa0583 0.70 -2.7 311,865 - SMa0583 0.70 -0.4 312,230 - -0.1 312,414 - SMa0585 0.17 -0.3 312,455 - SMa0585 0.20 -0.0 312,455 - SMa0585 0.20 -0.1 312,527 - SMa0585 0.26 -0.6 312,527 - SMa0585 0.26 -1.1 312,527 - SMa0585 0.26 -1.0 312,527 - SMa0585 0.26 -1.1 312,764 - SMa0585 0.44 +0.1 312,941 + SMa0585 0.58 +0.3 312,941 + SMa0585 0.58 -0.0 312,942 - SMa0585 0.58 -0.3
Or see this region's nucleotide sequence