Experiment: Paraquat dichloride 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0514 and SMa0516 overlap by 4 nucleotides SMa0516 and SMa0518 overlap by 4 nucleotides SMa0518 and SMa0520 are separated by 358 nucleotides
SMa0514: SMa0514 - gluconate kinase, at 278,603 to 279,121
SMa0514
SMa0516: SMa0516 - hypothetical protein, at 279,118 to 280,005
SMa0516
SMa0518: SMa0518 - hypothetical protein, at 280,002 to 280,334
SMa0518
SMa0520: SMa0520 - RpiR family transcriptional regulator, at 280,693 to 281,535
SMa0520
Position (kb) 280
281 Strain fitness (log2 ratio) -1
0
1
2
3 at 279.298 kb on + strand, within SMa0516 at 279.299 kb on - strand, within SMa0516 at 279.299 kb on - strand, within SMa0516 at 279.299 kb on - strand, within SMa0516 at 279.305 kb on + strand, within SMa0516 at 279.306 kb on - strand, within SMa0516 at 279.592 kb on + strand, within SMa0516 at 279.592 kb on + strand, within SMa0516 at 279.600 kb on + strand, within SMa0516 at 279.647 kb on + strand, within SMa0516 at 279.648 kb on - strand, within SMa0516 at 279.648 kb on - strand, within SMa0516 at 279.648 kb on - strand, within SMa0516 at 279.698 kb on + strand, within SMa0516 at 279.775 kb on + strand, within SMa0516 at 279.776 kb on - strand, within SMa0516 at 279.776 kb on - strand, within SMa0516 at 279.776 kb on - strand, within SMa0516 at 279.987 kb on + strand at 280.168 kb on + strand, within SMa0518 at 280.191 kb on + strand, within SMa0518 at 280.191 kb on + strand, within SMa0518 at 280.191 kb on + strand, within SMa0518 at 280.192 kb on - strand, within SMa0518 at 280.373 kb on + strand at 280.487 kb on + strand at 280.487 kb on + strand at 280.487 kb on + strand at 280.487 kb on + strand at 280.487 kb on + strand at 280.487 kb on + strand at 280.488 kb on - strand at 280.488 kb on - strand at 280.488 kb on - strand at 280.488 kb on - strand at 280.533 kb on + strand at 280.560 kb on + strand at 280.667 kb on - strand at 280.667 kb on - strand at 280.669 kb on - strand at 280.719 kb on + strand at 280.719 kb on + strand at 280.729 kb on - strand at 280.879 kb on + strand, within SMa0520 at 280.880 kb on - strand, within SMa0520 at 280.880 kb on - strand, within SMa0520 at 280.950 kb on + strand, within SMa0520 at 280.951 kb on - strand, within SMa0520 at 281.033 kb on - strand, within SMa0520 at 281.033 kb on - strand, within SMa0520 at 281.187 kb on + strand, within SMa0520 at 281.188 kb on - strand, within SMa0520 at 281.273 kb on - strand, within SMa0520 at 281.313 kb on + strand, within SMa0520 at 281.314 kb on - strand, within SMa0520
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.05 mg/ml remove 279,298 + SMa0516 0.20 +2.9 279,299 - SMa0516 0.20 +0.0 279,299 - SMa0516 0.20 +0.4 279,299 - SMa0516 0.20 -0.8 279,305 + SMa0516 0.21 +1.9 279,306 - SMa0516 0.21 +0.4 279,592 + SMa0516 0.53 -0.0 279,592 + SMa0516 0.53 -0.4 279,600 + SMa0516 0.54 -0.1 279,647 + SMa0516 0.60 +0.4 279,648 - SMa0516 0.60 -0.6 279,648 - SMa0516 0.60 -0.3 279,648 - SMa0516 0.60 +0.1 279,698 + SMa0516 0.65 +0.5 279,775 + SMa0516 0.74 -0.5 279,776 - SMa0516 0.74 -0.0 279,776 - SMa0516 0.74 -0.2 279,776 - SMa0516 0.74 -0.3 279,987 + +0.5 280,168 + SMa0518 0.50 +0.8 280,191 + SMa0518 0.57 +0.8 280,191 + SMa0518 0.57 +1.4 280,191 + SMa0518 0.57 +0.4 280,192 - SMa0518 0.57 +0.5 280,373 + +0.5 280,487 + +0.2 280,487 + +0.4 280,487 + -0.2 280,487 + +1.8 280,487 + +0.1 280,487 + +0.0 280,488 - +0.1 280,488 - -1.0 280,488 - +0.5 280,488 - +1.3 280,533 + -0.1 280,560 + -0.0 280,667 - +0.4 280,667 - -0.3 280,669 - +1.2 280,719 + -1.4 280,719 + -0.3 280,729 - +0.7 280,879 + SMa0520 0.22 -0.1 280,880 - SMa0520 0.22 -0.1 280,880 - SMa0520 0.22 +1.3 280,950 + SMa0520 0.30 +0.5 280,951 - SMa0520 0.31 -0.0 281,033 - SMa0520 0.40 +1.1 281,033 - SMa0520 0.40 -0.5 281,187 + SMa0520 0.59 +0.2 281,188 - SMa0520 0.59 +0.5 281,273 - SMa0520 0.69 -0.2 281,313 + SMa0520 0.74 -1.2 281,314 - SMa0520 0.74 -0.2
Or see this region's nucleotide sequence