Strain Fitness in Sinorhizobium meliloti 1021 around SMa0495

Experiment: Paraquat dichloride 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa0492 and SMa0493 overlap by 4 nucleotidesSMa0493 and SMa0495 are separated by 39 nucleotidesSMa0495 and SMa0496 are separated by 193 nucleotidesSMa0496 and SMa0498 are separated by 77 nucleotides SMa0492: SMa0492 - ABC transporter permease, at 267,881 to 268,564 SMa0492 SMa0493: SMa0493 - ABC transporter permease, at 268,561 to 269,259 SMa0493 SMa0495: SMa0495 - ABC transporter substrate-binding protein, at 269,299 to 270,117 SMa0495 SMa0496: SMa0496 - hypothetical protein, at 270,311 to 270,979 SMa0496 SMa0498: SMa0498 - LysR family transcriptional regulator, at 271,057 to 271,956 SMa0498 Position (kb) 269 270 271Strain fitness (log2 ratio) -2 -1 0 1 2 3at 268.345 kb on - strand, within SMa0492at 268.356 kb on - strand, within SMa0492at 268.392 kb on + strand, within SMa0492at 268.392 kb on + strand, within SMa0492at 268.392 kb on + strand, within SMa0492at 268.392 kb on + strand, within SMa0492at 268.393 kb on - strand, within SMa0492at 268.393 kb on - strand, within SMa0492at 268.393 kb on - strand, within SMa0492at 268.393 kb on - strand, within SMa0492at 268.393 kb on - strand, within SMa0492at 268.396 kb on + strand, within SMa0492at 268.397 kb on - strand, within SMa0492at 268.398 kb on + strand, within SMa0492at 268.399 kb on - strand, within SMa0492at 268.399 kb on - strand, within SMa0492at 268.496 kb on + strandat 268.497 kb on - strandat 268.497 kb on - strandat 268.524 kb on - strandat 268.524 kb on - strandat 268.524 kb on - strandat 268.524 kb on - strandat 268.524 kb on - strandat 268.548 kb on - strandat 268.548 kb on - strandat 268.581 kb on + strandat 268.582 kb on - strandat 268.582 kb on - strandat 268.624 kb on - strandat 268.646 kb on + strand, within SMa0493at 268.646 kb on + strand, within SMa0493at 268.648 kb on + strand, within SMa0493at 268.649 kb on - strand, within SMa0493at 268.649 kb on - strand, within SMa0493at 268.649 kb on - strand, within SMa0493at 268.649 kb on - strand, within SMa0493at 268.649 kb on - strand, within SMa0493at 268.651 kb on - strand, within SMa0493at 268.651 kb on - strand, within SMa0493at 268.651 kb on - strand, within SMa0493at 268.667 kb on + strand, within SMa0493at 268.667 kb on + strand, within SMa0493at 268.667 kb on + strand, within SMa0493at 268.667 kb on + strand, within SMa0493at 268.668 kb on - strand, within SMa0493at 268.668 kb on - strand, within SMa0493at 269.048 kb on + strand, within SMa0493at 269.100 kb on - strand, within SMa0493at 269.228 kb on + strandat 269.354 kb on + strandat 269.355 kb on - strandat 269.355 kb on - strandat 269.361 kb on + strandat 269.362 kb on - strandat 269.406 kb on + strand, within SMa0495at 269.612 kb on + strand, within SMa0495at 269.612 kb on + strand, within SMa0495at 269.612 kb on + strand, within SMa0495at 269.613 kb on - strand, within SMa0495at 269.660 kb on + strand, within SMa0495at 269.661 kb on - strand, within SMa0495at 269.961 kb on - strand, within SMa0495at 269.961 kb on - strand, within SMa0495at 270.005 kb on + strand, within SMa0495at 270.006 kb on - strand, within SMa0495at 270.006 kb on - strand, within SMa0495at 270.006 kb on - strand, within SMa0495at 270.006 kb on - strand, within SMa0495at 270.006 kb on - strand, within SMa0495at 270.076 kb on + strandat 270.173 kb on + strandat 270.241 kb on - strandat 270.346 kb on - strandat 270.396 kb on + strand, within SMa0496at 270.453 kb on - strand, within SMa0496at 270.453 kb on - strand, within SMa0496at 270.546 kb on - strand, within SMa0496at 270.636 kb on + strand, within SMa0496at 270.674 kb on - strand, within SMa0496at 270.674 kb on - strand, within SMa0496at 270.761 kb on + strand, within SMa0496at 270.761 kb on + strand, within SMa0496at 270.761 kb on + strand, within SMa0496at 270.762 kb on - strand, within SMa0496at 270.762 kb on - strand, within SMa0496at 270.884 kb on + strand, within SMa0496at 270.884 kb on + strand, within SMa0496at 270.885 kb on - strand, within SMa0496at 270.885 kb on - strand, within SMa0496at 270.888 kb on + strand, within SMa0496at 270.888 kb on + strand, within SMa0496at 270.888 kb on + strand, within SMa0496at 270.888 kb on + strand, within SMa0496at 270.888 kb on + strand, within SMa0496at 270.888 kb on + strand, within SMa0496at 270.888 kb on + strand, within SMa0496at 270.889 kb on - strand, within SMa0496at 270.889 kb on - strand, within SMa0496at 270.889 kb on - strand, within SMa0496at 270.889 kb on - strand, within SMa0496at 270.921 kb on + strandat 270.923 kb on + strandat 270.923 kb on + strandat 270.924 kb on - strandat 270.924 kb on - strandat 270.930 kb on - strandat 270.970 kb on + strandat 270.971 kb on - strandat 270.971 kb on - strandat 270.971 kb on - strandat 270.971 kb on - strandat 270.971 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.05 mg/ml
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268,345 - SMa0492 0.68 +0.1
268,356 - SMa0492 0.69 +0.3
268,392 + SMa0492 0.75 +0.1
268,392 + SMa0492 0.75 +0.9
268,392 + SMa0492 0.75 +1.7
268,392 + SMa0492 0.75 -0.2
268,393 - SMa0492 0.75 +0.0
268,393 - SMa0492 0.75 -0.4
268,393 - SMa0492 0.75 -0.5
268,393 - SMa0492 0.75 -0.9
268,393 - SMa0492 0.75 +0.1
268,396 + SMa0492 0.75 -0.1
268,397 - SMa0492 0.75 +0.9
268,398 + SMa0492 0.76 +0.1
268,399 - SMa0492 0.76 +0.3
268,399 - SMa0492 0.76 -1.1
268,496 + -0.3
268,497 - +0.5
268,497 - -0.4
268,524 - +0.1
268,524 - +0.3
268,524 - +0.8
268,524 - -0.3
268,524 - -0.4
268,548 - +0.6
268,548 - +2.1
268,581 + +1.1
268,582 - +1.2
268,582 - +0.2
268,624 - +0.5
268,646 + SMa0493 0.12 +0.3
268,646 + SMa0493 0.12 -1.4
268,648 + SMa0493 0.12 -0.0
268,649 - SMa0493 0.13 -0.0
268,649 - SMa0493 0.13 +0.3
268,649 - SMa0493 0.13 +0.2
268,649 - SMa0493 0.13 +0.2
268,649 - SMa0493 0.13 -0.3
268,651 - SMa0493 0.13 -0.2
268,651 - SMa0493 0.13 +1.4
268,651 - SMa0493 0.13 -0.1
268,667 + SMa0493 0.15 +0.3
268,667 + SMa0493 0.15 +0.5
268,667 + SMa0493 0.15 -1.2
268,667 + SMa0493 0.15 +0.4
268,668 - SMa0493 0.15 +0.2
268,668 - SMa0493 0.15 +2.9
269,048 + SMa0493 0.70 +0.8
269,100 - SMa0493 0.77 -0.4
269,228 + +0.1
269,354 + +0.4
269,355 - -0.6
269,355 - -0.4
269,361 + -0.6
269,362 - +0.3
269,406 + SMa0495 0.13 +0.6
269,612 + SMa0495 0.38 +1.8
269,612 + SMa0495 0.38 +0.1
269,612 + SMa0495 0.38 -0.7
269,613 - SMa0495 0.38 +0.1
269,660 + SMa0495 0.44 +0.3
269,661 - SMa0495 0.44 -0.0
269,961 - SMa0495 0.81 -0.1
269,961 - SMa0495 0.81 +0.2
270,005 + SMa0495 0.86 +0.4
270,006 - SMa0495 0.86 +0.5
270,006 - SMa0495 0.86 +0.7
270,006 - SMa0495 0.86 -0.9
270,006 - SMa0495 0.86 +0.4
270,006 - SMa0495 0.86 +1.1
270,076 + +0.5
270,173 + +0.2
270,241 - +0.2
270,346 - -0.1
270,396 + SMa0496 0.13 -0.2
270,453 - SMa0496 0.21 +0.7
270,453 - SMa0496 0.21 +1.4
270,546 - SMa0496 0.35 +0.4
270,636 + SMa0496 0.49 -0.1
270,674 - SMa0496 0.54 -0.2
270,674 - SMa0496 0.54 +0.6
270,761 + SMa0496 0.67 +0.1
270,761 + SMa0496 0.67 +0.5
270,761 + SMa0496 0.67 -0.9
270,762 - SMa0496 0.67 -0.4
270,762 - SMa0496 0.67 -0.1
270,884 + SMa0496 0.86 +0.2
270,884 + SMa0496 0.86 -1.9
270,885 - SMa0496 0.86 +0.6
270,885 - SMa0496 0.86 +0.3
270,888 + SMa0496 0.86 +0.3
270,888 + SMa0496 0.86 +1.2
270,888 + SMa0496 0.86 -0.2
270,888 + SMa0496 0.86 +0.1
270,888 + SMa0496 0.86 +0.4
270,888 + SMa0496 0.86 -0.3
270,888 + SMa0496 0.86 +0.1
270,889 - SMa0496 0.86 -0.1
270,889 - SMa0496 0.86 -0.1
270,889 - SMa0496 0.86 +0.1
270,889 - SMa0496 0.86 +1.0
270,921 + +0.2
270,923 + +0.4
270,923 + -0.2
270,924 - +0.8
270,924 - -1.5
270,930 - +0.4
270,970 + -0.8
270,971 - -0.6
270,971 - +0.7
270,971 - +0.3
270,971 - -0.4
270,971 - +1.2

Or see this region's nucleotide sequence