Experiment: Paraquat dichloride 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0394 and SMa0396 overlap by 4 nucleotides SMa0396 and SMa0398 overlap by 4 nucleotides SMa0398 and SMa0400 are separated by 3 nucleotides
SMa0394: SMa0394 - ABC transporter permease, at 213,683 to 214,627
SMa0394
SMa0396: SMa0396 - ABC transporter permease, at 214,624 to 215,424
SMa0396
SMa0398: SMa0398 - histidinol dehydrogenase, at 215,421 to 216,791
SMa0398
SMa0400: SMa0400 - Dehydrogenase, Zn-dependent, at 216,795 to 217,808
SMa0400
Position (kb) 215
216
217 Strain fitness (log2 ratio) -1
0
1
2
3 at 214.485 kb on - strand, within SMa0394 at 214.485 kb on - strand, within SMa0394 at 214.485 kb on - strand, within SMa0394 at 214.598 kb on - strand at 214.900 kb on + strand, within SMa0396 at 214.900 kb on + strand, within SMa0396 at 214.934 kb on - strand, within SMa0396 at 214.992 kb on - strand, within SMa0396 at 215.162 kb on - strand, within SMa0396 at 215.162 kb on - strand, within SMa0396 at 215.162 kb on - strand, within SMa0396 at 215.293 kb on + strand, within SMa0396 at 215.293 kb on + strand, within SMa0396 at 215.346 kb on - strand at 215.346 kb on - strand at 215.405 kb on - strand at 215.448 kb on + strand at 215.449 kb on - strand at 215.481 kb on + strand at 215.545 kb on + strand at 215.546 kb on - strand at 215.648 kb on - strand at 215.895 kb on - strand, within SMa0398 at 216.064 kb on - strand at 216.276 kb on + strand, within SMa0398 at 216.277 kb on - strand, within SMa0398 at 216.433 kb on - strand, within SMa0398 at 216.543 kb on - strand, within SMa0398 at 216.543 kb on - strand, within SMa0398 at 216.720 kb on + strand at 216.720 kb on + strand at 216.720 kb on + strand at 216.771 kb on + strand at 216.928 kb on - strand, within SMa0400 at 216.928 kb on - strand, within SMa0400 at 216.928 kb on - strand, within SMa0400 at 217.346 kb on - strand, within SMa0400 at 217.503 kb on - strand, within SMa0400 at 217.578 kb on - strand, within SMa0400 at 217.746 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.05 mg/ml remove 214,485 - SMa0394 0.85 -1.4 214,485 - SMa0394 0.85 +0.1 214,485 - SMa0394 0.85 -1.5 214,598 - +2.1 214,900 + SMa0396 0.34 -0.1 214,900 + SMa0396 0.34 -0.6 214,934 - SMa0396 0.39 +2.4 214,992 - SMa0396 0.46 +1.6 215,162 - SMa0396 0.67 -0.1 215,162 - SMa0396 0.67 +0.5 215,162 - SMa0396 0.67 +0.8 215,293 + SMa0396 0.84 -0.3 215,293 + SMa0396 0.84 +0.4 215,346 - -0.2 215,346 - -0.7 215,405 - -0.3 215,448 + -0.3 215,449 - +0.5 215,481 + +0.6 215,545 + +3.0 215,546 - +0.2 215,648 - +1.2 215,895 - SMa0398 0.35 +0.1 216,064 - +1.7 216,276 + SMa0398 0.62 +0.1 216,277 - SMa0398 0.62 +2.6 216,433 - SMa0398 0.74 +0.8 216,543 - SMa0398 0.82 -0.3 216,543 - SMa0398 0.82 +1.3 216,720 + -0.4 216,720 + +0.2 216,720 + -0.1 216,771 + +0.3 216,928 - SMa0400 0.13 -0.7 216,928 - SMa0400 0.13 -0.1 216,928 - SMa0400 0.13 -0.1 217,346 - SMa0400 0.54 -0.2 217,503 - SMa0400 0.70 +1.1 217,578 - SMa0400 0.77 -0.9 217,746 + -0.2
Or see this region's nucleotide sequence