Experiment: Paraquat dichloride 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0310 and SMa0312 are separated by 338 nucleotides SMa0312 and SMa0314 overlap by 4 nucleotides SMa0314 and SMa0316 are separated by 82 nucleotides
SMa0310: SMa0310 - hypothetical protein, at 174,273 to 175,004
SMa0310
SMa0312: SMa0312 - hypothetical protein, at 175,343 to 175,876
SMa0312
SMa0314: SMa0314 - hypothetical protein, at 175,873 to 176,124
SMa0314
SMa0316: SMa0316 - hypothetical protein, at 176,207 to 177,469
SMa0316
Position (kb) 175
176
177 Strain fitness (log2 ratio) -2
-1
0
1 at 174.878 kb on + strand, within SMa0310 at 174.879 kb on - strand, within SMa0310 at 175.153 kb on + strand at 175.160 kb on - strand at 175.238 kb on - strand at 175.384 kb on + strand at 175.385 kb on - strand at 175.385 kb on - strand at 175.508 kb on + strand, within SMa0312 at 175.508 kb on + strand, within SMa0312 at 175.509 kb on - strand, within SMa0312 at 175.509 kb on - strand, within SMa0312 at 175.900 kb on + strand, within SMa0314 at 176.009 kb on - strand, within SMa0314 at 176.046 kb on + strand, within SMa0314 at 176.047 kb on - strand, within SMa0314 at 176.149 kb on - strand at 176.222 kb on - strand at 176.222 kb on - strand at 176.222 kb on - strand at 176.378 kb on + strand, within SMa0316 at 176.674 kb on + strand, within SMa0316 at 176.740 kb on + strand, within SMa0316 at 176.741 kb on - strand, within SMa0316 at 176.741 kb on - strand, within SMa0316 at 176.855 kb on - strand, within SMa0316 at 176.855 kb on - strand, within SMa0316
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.05 mg/ml remove 174,878 + SMa0310 0.83 +0.8 174,879 - SMa0310 0.83 -0.3 175,153 + +0.5 175,160 - -0.3 175,238 - +1.4 175,384 + +0.3 175,385 - -0.3 175,385 - +1.1 175,508 + SMa0312 0.31 +0.1 175,508 + SMa0312 0.31 +0.4 175,509 - SMa0312 0.31 -0.8 175,509 - SMa0312 0.31 -1.1 175,900 + SMa0314 0.11 -0.2 176,009 - SMa0314 0.54 +0.2 176,046 + SMa0314 0.69 -0.7 176,047 - SMa0314 0.69 -0.8 176,149 - -0.9 176,222 - +0.3 176,222 - +0.3 176,222 - +0.1 176,378 + SMa0316 0.14 -0.4 176,674 + SMa0316 0.37 +0.7 176,740 + SMa0316 0.42 -2.5 176,741 - SMa0316 0.42 +0.2 176,741 - SMa0316 0.42 -1.2 176,855 - SMa0316 0.51 -0.1 176,855 - SMa0316 0.51 -0.4
Or see this region's nucleotide sequence