Experiment: Paraquat dichloride 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0067 and SMa0070 are separated by 185 nucleotides SMa0070 and SMa0072 overlap by 4 nucleotides SMa0072 and SMa0074 are separated by 7 nucleotides
SMa0067: SMa0067 - ABC transporter substrate-binding protein, at 36,205 to 37,167
SMa0067
SMa0070: SMa0070 - ABC transporter permease, at 37,353 to 38,336
SMa0070
SMa0072: SMa0072 - ABC transporter ATP-binding protein, at 38,333 to 39,064
SMa0072
SMa0074: SMa0074 - 3-ketoacyl-ACP reductase, at 39,072 to 39,830
SMa0074
Position (kb) 37
38
39 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 36.481 kb on + strand, within SMa0067 at 36.574 kb on - strand, within SMa0067 at 36.731 kb on + strand, within SMa0067 at 36.742 kb on + strand, within SMa0067 at 36.742 kb on + strand, within SMa0067 at 36.743 kb on - strand, within SMa0067 at 36.992 kb on - strand, within SMa0067 at 36.992 kb on - strand, within SMa0067 at 36.992 kb on - strand, within SMa0067 at 37.021 kb on + strand, within SMa0067 at 37.021 kb on + strand, within SMa0067 at 37.021 kb on + strand, within SMa0067 at 37.021 kb on + strand, within SMa0067 at 37.022 kb on - strand, within SMa0067 at 37.022 kb on - strand, within SMa0067 at 37.054 kb on + strand, within SMa0067 at 37.054 kb on + strand, within SMa0067 at 37.055 kb on - strand, within SMa0067 at 37.686 kb on + strand, within SMa0070 at 37.686 kb on + strand, within SMa0070 at 37.686 kb on + strand, within SMa0070 at 37.686 kb on + strand, within SMa0070 at 37.827 kb on + strand, within SMa0070 at 37.827 kb on + strand, within SMa0070 at 37.827 kb on + strand, within SMa0070 at 37.828 kb on - strand, within SMa0070 at 37.828 kb on - strand, within SMa0070 at 37.828 kb on - strand, within SMa0070 at 38.377 kb on + strand at 38.377 kb on + strand at 38.377 kb on + strand at 38.378 kb on - strand at 38.378 kb on - strand at 38.378 kb on - strand at 38.378 kb on - strand at 38.538 kb on + strand, within SMa0072 at 38.538 kb on + strand, within SMa0072 at 38.588 kb on + strand, within SMa0072 at 38.588 kb on + strand, within SMa0072 at 38.589 kb on - strand, within SMa0072 at 38.589 kb on - strand, within SMa0072 at 38.589 kb on - strand, within SMa0072 at 38.594 kb on + strand, within SMa0072 at 38.595 kb on - strand, within SMa0072 at 39.255 kb on + strand, within SMa0074 at 39.255 kb on + strand, within SMa0074 at 39.256 kb on - strand, within SMa0074 at 39.276 kb on - strand, within SMa0074 at 39.280 kb on + strand, within SMa0074 at 39.281 kb on - strand, within SMa0074 at 39.281 kb on - strand, within SMa0074 at 39.305 kb on + strand, within SMa0074
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.05 mg/ml remove 36,481 + SMa0067 0.29 -0.1 36,574 - SMa0067 0.38 -0.2 36,731 + SMa0067 0.55 +0.1 36,742 + SMa0067 0.56 -0.5 36,742 + SMa0067 0.56 -0.1 36,743 - SMa0067 0.56 +0.5 36,992 - SMa0067 0.82 +0.2 36,992 - SMa0067 0.82 +1.1 36,992 - SMa0067 0.82 +0.0 37,021 + SMa0067 0.85 -0.5 37,021 + SMa0067 0.85 +0.4 37,021 + SMa0067 0.85 -0.7 37,021 + SMa0067 0.85 -0.7 37,022 - SMa0067 0.85 -0.8 37,022 - SMa0067 0.85 +0.3 37,054 + SMa0067 0.88 -1.1 37,054 + SMa0067 0.88 +0.5 37,055 - SMa0067 0.88 +1.0 37,686 + SMa0070 0.34 -0.3 37,686 + SMa0070 0.34 +0.1 37,686 + SMa0070 0.34 -0.5 37,686 + SMa0070 0.34 -0.8 37,827 + SMa0070 0.48 +0.1 37,827 + SMa0070 0.48 -0.4 37,827 + SMa0070 0.48 -1.4 37,828 - SMa0070 0.48 -1.3 37,828 - SMa0070 0.48 -0.9 37,828 - SMa0070 0.48 -0.4 38,377 + -0.5 38,377 + +3.2 38,377 + -1.0 38,378 - -1.9 38,378 - -0.0 38,378 - -0.6 38,378 - -0.4 38,538 + SMa0072 0.28 -0.4 38,538 + SMa0072 0.28 -0.3 38,588 + SMa0072 0.35 -0.3 38,588 + SMa0072 0.35 -0.8 38,589 - SMa0072 0.35 +0.5 38,589 - SMa0072 0.35 +0.2 38,589 - SMa0072 0.35 +0.3 38,594 + SMa0072 0.36 +0.5 38,595 - SMa0072 0.36 -0.2 39,255 + SMa0074 0.24 -0.1 39,255 + SMa0074 0.24 -0.1 39,256 - SMa0074 0.24 +1.3 39,276 - SMa0074 0.27 -0.5 39,280 + SMa0074 0.27 -0.2 39,281 - SMa0074 0.28 -0.1 39,281 - SMa0074 0.28 -0.2 39,305 + SMa0074 0.31 +0.1
Or see this region's nucleotide sequence