Experiment: Paraquat dichloride 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21488 and SM_b21489 overlap by 4 nucleotides SM_b21489 and SM_b22024 overlap by 4 nucleotides SM_b22024 and SM_b21490 are separated by 135 nucleotides SM_b21490 and SM_b21491 are separated by 20 nucleotides
SM_b21488: SM_b21488 - cytochrome o ubiquinol oxidase subunit I, at 1,409,489 to 1,411,498
_b21488
SM_b21489: SM_b21489 - cytochrome O ubiquinol oxidase subunit III, at 1,411,495 to 1,412,127
_b21489
SM_b22024: SM_b22024 - cytochrome O ubiquinol oxidase CyoD, at 1,412,124 to 1,412,525
_b22024
SM_b21490: SM_b21490 - hypothetical protein, at 1,412,661 to 1,413,416
_b21490
SM_b21491: SM_b21491 - hypothetical protein, at 1,413,437 to 1,413,967
_b21491
Position (kb)
1412
1413 Strain fitness (log2 ratio)
-1
0
1 at 1411.166 kb on + strand, within SM_b21488 at 1411.216 kb on + strand, within SM_b21488 at 1411.256 kb on - strand, within SM_b21488 at 1411.256 kb on - strand, within SM_b21488 at 1411.256 kb on - strand, within SM_b21488 at 1411.341 kb on - strand at 1411.410 kb on - strand at 1411.550 kb on - strand at 1411.603 kb on + strand, within SM_b21489 at 1411.603 kb on + strand, within SM_b21489 at 1411.604 kb on - strand, within SM_b21489 at 1411.669 kb on + strand, within SM_b21489 at 1411.787 kb on - strand, within SM_b21489 at 1412.105 kb on - strand at 1412.566 kb on + strand at 1412.567 kb on - strand at 1412.632 kb on + strand at 1412.946 kb on + strand, within SM_b21490 at 1413.363 kb on + strand at 1413.364 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.05 mg/ml remove 1,411,166 + SM_b21488 0.83 +0.2 1,411,216 + SM_b21488 0.86 +0.3 1,411,256 - SM_b21488 0.88 +0.7 1,411,256 - SM_b21488 0.88 +1.3 1,411,256 - SM_b21488 0.88 -0.1 1,411,341 - -0.6 1,411,410 - -0.2 1,411,550 - +0.7 1,411,603 + SM_b21489 0.17 +0.5 1,411,603 + SM_b21489 0.17 +0.6 1,411,604 - SM_b21489 0.17 -1.2 1,411,669 + SM_b21489 0.27 -0.3 1,411,787 - SM_b21489 0.46 +0.4 1,412,105 - -0.1 1,412,566 + +0.2 1,412,567 - +0.5 1,412,632 + +0.4 1,412,946 + SM_b21490 0.38 +0.6 1,413,363 + -0.2 1,413,364 - -0.2
Or see this region's nucleotide sequence