Experiment: Paraquat dichloride 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21566 and SM_b22023 are separated by 46 nucleotides SM_b22023 and SM_b21568 are separated by 281 nucleotides SM_b21568 and SM_b21569 are separated by 232 nucleotides SM_b21569 and SM_b21570 are separated by 46 nucleotides
SM_b21566: SM_b21566 - molecular chaperone GroEL, at 1,104,605 to 1,106,233
_b21566
SM_b22023: SM_b22023 - molecular chaperone GroES, at 1,106,280 to 1,106,594
_b22023
SM_b21568: SM_b21568 - hypothetical protein, at 1,106,876 to 1,107,148
_b21568
SM_b21569: SM_b21569 - transcriptional regulator, at 1,107,381 to 1,107,980
_b21569
SM_b21570: SM_b21570 - NADH-dependent oxidase, at 1,108,027 to 1,110,063
_b21570
Position (kb) 1106
1107
1108 Strain fitness (log2 ratio) -1
0
1 at 1106.148 kb on - strand at 1106.148 kb on - strand at 1106.153 kb on + strand at 1106.249 kb on + strand at 1106.249 kb on + strand at 1106.250 kb on - strand at 1106.250 kb on - strand at 1106.267 kb on + strand at 1106.267 kb on + strand at 1106.268 kb on - strand at 1106.278 kb on + strand at 1106.289 kb on + strand at 1106.466 kb on + strand, within SM_b22023 at 1106.466 kb on + strand, within SM_b22023 at 1106.567 kb on + strand at 1106.568 kb on - strand at 1106.806 kb on + strand at 1106.806 kb on + strand at 1106.858 kb on - strand at 1106.858 kb on - strand at 1106.858 kb on - strand at 1106.861 kb on + strand at 1106.861 kb on + strand at 1106.861 kb on + strand at 1106.862 kb on - strand at 1106.862 kb on - strand at 1106.935 kb on + strand, within SM_b21568 at 1106.936 kb on - strand, within SM_b21568 at 1106.936 kb on - strand, within SM_b21568 at 1106.978 kb on + strand, within SM_b21568 at 1106.978 kb on + strand, within SM_b21568 at 1106.978 kb on + strand, within SM_b21568 at 1106.978 kb on + strand at 1106.978 kb on + strand, within SM_b21568 at 1106.979 kb on - strand, within SM_b21568 at 1106.993 kb on + strand, within SM_b21568 at 1106.994 kb on - strand, within SM_b21568 at 1106.994 kb on - strand, within SM_b21568 at 1107.049 kb on + strand, within SM_b21568 at 1107.049 kb on + strand, within SM_b21568 at 1107.049 kb on + strand, within SM_b21568 at 1107.050 kb on - strand, within SM_b21568 at 1107.279 kb on - strand at 1107.400 kb on - strand at 1107.467 kb on - strand, within SM_b21569 at 1107.541 kb on + strand, within SM_b21569 at 1107.541 kb on + strand, within SM_b21569 at 1107.541 kb on + strand, within SM_b21569 at 1107.984 kb on + strand at 1107.984 kb on + strand at 1107.985 kb on - strand at 1107.985 kb on - strand at 1107.985 kb on - strand at 1107.985 kb on - strand at 1107.995 kb on - strand at 1108.032 kb on + strand at 1108.033 kb on - strand at 1108.048 kb on + strand at 1108.058 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.05 mg/ml remove 1,106,148 - -0.2 1,106,148 - -0.2 1,106,153 + -0.5 1,106,249 + -0.5 1,106,249 + -0.3 1,106,250 - -0.1 1,106,250 - +0.3 1,106,267 + +0.2 1,106,267 + -0.2 1,106,268 - -0.1 1,106,278 + -0.1 1,106,289 + +0.8 1,106,466 + SM_b22023 0.59 +0.5 1,106,466 + SM_b22023 0.59 -0.0 1,106,567 + +0.1 1,106,568 - -0.2 1,106,806 + -0.6 1,106,806 + +0.9 1,106,858 - +0.2 1,106,858 - +0.1 1,106,858 - -0.6 1,106,861 + +0.1 1,106,861 + +0.8 1,106,861 + -0.1 1,106,862 - +0.4 1,106,862 - +0.7 1,106,935 + SM_b21568 0.22 +0.8 1,106,936 - SM_b21568 0.22 -0.1 1,106,936 - SM_b21568 0.22 +0.5 1,106,978 + SM_b21568 0.37 +1.4 1,106,978 + SM_b21568 0.37 -0.2 1,106,978 + SM_b21568 0.37 -0.3 1,106,978 + +1.2 1,106,978 + SM_b21568 0.37 +0.1 1,106,979 - SM_b21568 0.38 +0.5 1,106,993 + SM_b21568 0.43 -0.2 1,106,994 - SM_b21568 0.43 -0.3 1,106,994 - SM_b21568 0.43 +0.5 1,107,049 + SM_b21568 0.63 +0.3 1,107,049 + SM_b21568 0.63 +0.1 1,107,049 + SM_b21568 0.63 -0.0 1,107,050 - SM_b21568 0.64 +0.5 1,107,279 - +0.6 1,107,400 - -1.0 1,107,467 - SM_b21569 0.14 +0.6 1,107,541 + SM_b21569 0.27 +0.5 1,107,541 + SM_b21569 0.27 +0.8 1,107,541 + SM_b21569 0.27 -0.7 1,107,984 + +1.0 1,107,984 + -0.7 1,107,985 - -0.8 1,107,985 - +0.0 1,107,985 - +1.3 1,107,985 - -0.1 1,107,995 - -0.2 1,108,032 + +0.5 1,108,033 - +0.2 1,108,048 + +0.4 1,108,058 + -0.2
Or see this region's nucleotide sequence