Experiment: Paraquat dichloride 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21540 and SM_b21541 are separated by 64 nucleotides SM_b21541 and SM_b21542 are separated by 5 nucleotides
SM_b21540: SM_b21540 - iron uptake ABC transporter substrate-binding protein precursor, at 1,070,450 to 1,071,472
_b21540
SM_b21541: SM_b21541 - iron ABC transporter ATP-binding protein, at 1,071,537 to 1,072,724
_b21541
SM_b21542: SM_b21542 - iron uptake ABC transporter permease, at 1,072,730 to 1,074,772
_b21542
Position (kb)
1071
1072
1073 Strain fitness (log2 ratio)
-2
-1
0
1 at 1070.538 kb on - strand at 1070.538 kb on - strand at 1070.570 kb on + strand, within SM_b21540 at 1070.571 kb on - strand, within SM_b21540 at 1070.764 kb on - strand, within SM_b21540 at 1070.764 kb on - strand, within SM_b21540 at 1070.828 kb on + strand, within SM_b21540 at 1070.828 kb on + strand, within SM_b21540 at 1070.828 kb on + strand, within SM_b21540 at 1070.828 kb on + strand, within SM_b21540 at 1070.829 kb on - strand, within SM_b21540 at 1070.829 kb on - strand, within SM_b21540 at 1070.829 kb on - strand, within SM_b21540 at 1070.829 kb on - strand, within SM_b21540 at 1070.829 kb on - strand, within SM_b21540 at 1070.829 kb on - strand, within SM_b21540 at 1070.846 kb on + strand, within SM_b21540 at 1070.851 kb on + strand, within SM_b21540 at 1071.053 kb on + strand, within SM_b21540 at 1071.054 kb on - strand, within SM_b21540 at 1071.054 kb on - strand, within SM_b21540 at 1071.054 kb on - strand, within SM_b21540 at 1071.055 kb on + strand, within SM_b21540 at 1071.055 kb on + strand, within SM_b21540 at 1071.055 kb on + strand, within SM_b21540 at 1071.055 kb on + strand, within SM_b21540 at 1071.055 kb on + strand, within SM_b21540 at 1071.056 kb on - strand, within SM_b21540 at 1071.056 kb on - strand, within SM_b21540 at 1071.115 kb on - strand, within SM_b21540 at 1071.167 kb on - strand, within SM_b21540 at 1071.293 kb on + strand, within SM_b21540 at 1071.293 kb on + strand, within SM_b21540 at 1071.293 kb on + strand, within SM_b21540 at 1071.294 kb on - strand, within SM_b21540 at 1071.294 kb on - strand, within SM_b21540 at 1071.321 kb on - strand, within SM_b21540 at 1071.542 kb on + strand at 1071.542 kb on + strand at 1071.543 kb on - strand at 1071.543 kb on - strand at 1071.543 kb on - strand at 1071.664 kb on + strand, within SM_b21541 at 1071.664 kb on + strand, within SM_b21541 at 1071.664 kb on + strand, within SM_b21541 at 1071.665 kb on - strand, within SM_b21541 at 1071.665 kb on - strand, within SM_b21541 at 1071.665 kb on - strand, within SM_b21541 at 1071.665 kb on - strand, within SM_b21541 at 1071.760 kb on + strand, within SM_b21541 at 1071.824 kb on + strand, within SM_b21541 at 1071.855 kb on + strand, within SM_b21541 at 1071.896 kb on + strand, within SM_b21541 at 1071.896 kb on + strand, within SM_b21541 at 1071.897 kb on - strand, within SM_b21541 at 1072.270 kb on + strand, within SM_b21541 at 1072.271 kb on - strand, within SM_b21541 at 1072.271 kb on - strand, within SM_b21541 at 1072.290 kb on + strand, within SM_b21541 at 1072.290 kb on + strand, within SM_b21541 at 1072.460 kb on + strand, within SM_b21541 at 1072.551 kb on - strand, within SM_b21541 at 1072.832 kb on + strand at 1072.832 kb on + strand at 1072.833 kb on - strand at 1072.833 kb on - strand at 1072.892 kb on + strand at 1072.892 kb on + strand at 1072.893 kb on - strand at 1072.893 kb on - strand at 1073.165 kb on + strand, within SM_b21542 at 1073.336 kb on + strand, within SM_b21542 at 1073.337 kb on - strand, within SM_b21542 at 1073.337 kb on - strand, within SM_b21542 at 1073.439 kb on - strand, within SM_b21542 at 1073.492 kb on + strand, within SM_b21542 at 1073.523 kb on + strand, within SM_b21542 at 1073.556 kb on + strand, within SM_b21542 at 1073.557 kb on - strand, within SM_b21542
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.05 mg/ml remove 1,070,538 - -0.1 1,070,538 - +0.7 1,070,570 + SM_b21540 0.12 -0.2 1,070,571 - SM_b21540 0.12 +0.1 1,070,764 - SM_b21540 0.31 -1.0 1,070,764 - SM_b21540 0.31 -0.1 1,070,828 + SM_b21540 0.37 -0.6 1,070,828 + SM_b21540 0.37 -0.6 1,070,828 + SM_b21540 0.37 -0.4 1,070,828 + SM_b21540 0.37 -0.3 1,070,829 - SM_b21540 0.37 -0.5 1,070,829 - SM_b21540 0.37 +0.2 1,070,829 - SM_b21540 0.37 -1.0 1,070,829 - SM_b21540 0.37 -0.3 1,070,829 - SM_b21540 0.37 +0.6 1,070,829 - SM_b21540 0.37 -0.3 1,070,846 + SM_b21540 0.39 -0.0 1,070,851 + SM_b21540 0.39 +0.3 1,071,053 + SM_b21540 0.59 -0.3 1,071,054 - SM_b21540 0.59 +1.2 1,071,054 - SM_b21540 0.59 -0.4 1,071,054 - SM_b21540 0.59 +0.3 1,071,055 + SM_b21540 0.59 -0.6 1,071,055 + SM_b21540 0.59 +1.2 1,071,055 + SM_b21540 0.59 +0.0 1,071,055 + SM_b21540 0.59 +0.3 1,071,055 + SM_b21540 0.59 +0.6 1,071,056 - SM_b21540 0.59 -0.2 1,071,056 - SM_b21540 0.59 +0.9 1,071,115 - SM_b21540 0.65 -0.5 1,071,167 - SM_b21540 0.70 -0.8 1,071,293 + SM_b21540 0.82 +0.2 1,071,293 + SM_b21540 0.82 -0.7 1,071,293 + SM_b21540 0.82 +1.0 1,071,294 - SM_b21540 0.83 +0.1 1,071,294 - SM_b21540 0.83 -0.2 1,071,321 - SM_b21540 0.85 -1.1 1,071,542 + -0.7 1,071,542 + -2.1 1,071,543 - +0.2 1,071,543 - +0.1 1,071,543 - +0.3 1,071,664 + SM_b21541 0.11 +0.6 1,071,664 + SM_b21541 0.11 -0.3 1,071,664 + SM_b21541 0.11 -1.6 1,071,665 - SM_b21541 0.11 -0.5 1,071,665 - SM_b21541 0.11 -1.3 1,071,665 - SM_b21541 0.11 +0.4 1,071,665 - SM_b21541 0.11 +0.3 1,071,760 + SM_b21541 0.19 +0.0 1,071,824 + SM_b21541 0.24 -0.5 1,071,855 + SM_b21541 0.27 -0.4 1,071,896 + SM_b21541 0.30 -1.2 1,071,896 + SM_b21541 0.30 -0.4 1,071,897 - SM_b21541 0.30 -0.2 1,072,270 + SM_b21541 0.62 +0.0 1,072,271 - SM_b21541 0.62 -0.0 1,072,271 - SM_b21541 0.62 +0.1 1,072,290 + SM_b21541 0.63 +0.9 1,072,290 + SM_b21541 0.63 -0.8 1,072,460 + SM_b21541 0.78 -0.8 1,072,551 - SM_b21541 0.85 -0.1 1,072,832 + -0.2 1,072,832 + +0.3 1,072,833 - +0.3 1,072,833 - -0.3 1,072,892 + -0.4 1,072,892 + -0.8 1,072,893 - -0.8 1,072,893 - -0.2 1,073,165 + SM_b21542 0.21 +0.2 1,073,336 + SM_b21542 0.30 -0.3 1,073,337 - SM_b21542 0.30 -1.7 1,073,337 - SM_b21542 0.30 -0.7 1,073,439 - SM_b21542 0.35 -0.8 1,073,492 + SM_b21542 0.37 +0.3 1,073,523 + SM_b21542 0.39 +0.5 1,073,556 + SM_b21542 0.40 +0.2 1,073,557 - SM_b21542 0.40 -1.3
Or see this region's nucleotide sequence