Experiment: Paraquat dichloride 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21248 and SM_b21249 are separated by 31 nucleotides SM_b21249 and SM_b21250 are separated by 410 nucleotides
SM_b21248: SM_b21248 - aminotransferase, at 816,422 to 817,612
_b21248
SM_b21249: SM_b21249 - sulfotransferase, at 817,644 to 818,486
_b21249
SM_b21250: SM_b21250 - glycosyltransferase, at 818,897 to 820,180
_b21250
Position (kb) 817
818
819 Strain fitness (log2 ratio) -2
-1
0
1
2 at 816.754 kb on - strand, within SM_b21248 at 816.832 kb on - strand, within SM_b21248 at 816.867 kb on + strand, within SM_b21248 at 816.867 kb on + strand, within SM_b21248 at 817.055 kb on + strand, within SM_b21248 at 817.055 kb on + strand, within SM_b21248 at 817.056 kb on - strand, within SM_b21248 at 817.056 kb on - strand, within SM_b21248 at 817.068 kb on - strand, within SM_b21248 at 817.194 kb on + strand, within SM_b21248 at 817.194 kb on + strand, within SM_b21248 at 817.194 kb on + strand, within SM_b21248 at 817.194 kb on + strand, within SM_b21248 at 817.194 kb on + strand, within SM_b21248 at 817.195 kb on - strand, within SM_b21248 at 817.195 kb on - strand, within SM_b21248 at 817.213 kb on + strand, within SM_b21248 at 817.213 kb on + strand, within SM_b21248 at 817.216 kb on + strand, within SM_b21248 at 817.216 kb on + strand, within SM_b21248 at 817.298 kb on + strand, within SM_b21248 at 817.299 kb on - strand, within SM_b21248 at 817.299 kb on - strand, within SM_b21248 at 817.301 kb on - strand, within SM_b21248 at 817.301 kb on - strand, within SM_b21248 at 817.427 kb on - strand, within SM_b21248 at 817.610 kb on + strand at 817.744 kb on + strand, within SM_b21249 at 817.745 kb on - strand, within SM_b21249 at 817.831 kb on - strand, within SM_b21249 at 818.020 kb on + strand, within SM_b21249 at 818.021 kb on - strand, within SM_b21249 at 818.040 kb on - strand, within SM_b21249 at 818.059 kb on - strand, within SM_b21249 at 818.113 kb on + strand, within SM_b21249 at 818.114 kb on - strand, within SM_b21249 at 818.145 kb on + strand, within SM_b21249 at 818.145 kb on + strand, within SM_b21249 at 818.146 kb on - strand, within SM_b21249 at 818.287 kb on - strand, within SM_b21249 at 818.303 kb on + strand, within SM_b21249 at 818.304 kb on - strand, within SM_b21249 at 818.304 kb on - strand, within SM_b21249 at 818.314 kb on - strand, within SM_b21249 at 818.314 kb on - strand, within SM_b21249 at 818.314 kb on - strand, within SM_b21249 at 818.362 kb on + strand, within SM_b21249 at 818.363 kb on - strand, within SM_b21249 at 818.393 kb on - strand, within SM_b21249 at 818.432 kb on + strand at 818.440 kb on - strand at 818.534 kb on + strand at 818.576 kb on - strand at 818.695 kb on + strand at 818.695 kb on + strand at 818.695 kb on + strand at 818.792 kb on + strand at 818.827 kb on - strand at 819.018 kb on - strand at 819.018 kb on - strand at 819.031 kb on + strand, within SM_b21250 at 819.032 kb on - strand, within SM_b21250 at 819.032 kb on - strand, within SM_b21250 at 819.176 kb on + strand, within SM_b21250 at 819.456 kb on + strand, within SM_b21250 at 819.456 kb on + strand, within SM_b21250 at 819.457 kb on - strand, within SM_b21250 at 819.457 kb on - strand, within SM_b21250 at 819.458 kb on + strand, within SM_b21250 at 819.458 kb on + strand, within SM_b21250
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.05 mg/ml remove 816,754 - SM_b21248 0.28 -0.2 816,832 - SM_b21248 0.34 +0.1 816,867 + SM_b21248 0.37 +0.4 816,867 + SM_b21248 0.37 +0.2 817,055 + SM_b21248 0.53 -0.2 817,055 + SM_b21248 0.53 -0.5 817,056 - SM_b21248 0.53 +0.5 817,056 - SM_b21248 0.53 +0.2 817,068 - SM_b21248 0.54 +0.0 817,194 + SM_b21248 0.65 +0.2 817,194 + SM_b21248 0.65 +0.6 817,194 + SM_b21248 0.65 -2.1 817,194 + SM_b21248 0.65 +0.4 817,194 + SM_b21248 0.65 +0.4 817,195 - SM_b21248 0.65 -0.8 817,195 - SM_b21248 0.65 -0.3 817,213 + SM_b21248 0.66 -0.6 817,213 + SM_b21248 0.66 -0.1 817,216 + SM_b21248 0.67 +2.1 817,216 + SM_b21248 0.67 -0.2 817,298 + SM_b21248 0.74 -0.1 817,299 - SM_b21248 0.74 +0.0 817,299 - SM_b21248 0.74 -0.9 817,301 - SM_b21248 0.74 +0.7 817,301 - SM_b21248 0.74 -1.4 817,427 - SM_b21248 0.84 -1.2 817,610 + -0.1 817,744 + SM_b21249 0.12 +0.3 817,745 - SM_b21249 0.12 +0.7 817,831 - SM_b21249 0.22 -0.9 818,020 + SM_b21249 0.45 -0.3 818,021 - SM_b21249 0.45 +0.0 818,040 - SM_b21249 0.47 +0.4 818,059 - SM_b21249 0.49 +0.7 818,113 + SM_b21249 0.56 +0.5 818,114 - SM_b21249 0.56 +1.3 818,145 + SM_b21249 0.59 +0.6 818,145 + SM_b21249 0.59 -0.1 818,146 - SM_b21249 0.60 +0.8 818,287 - SM_b21249 0.76 -0.3 818,303 + SM_b21249 0.78 -0.3 818,304 - SM_b21249 0.78 +0.0 818,304 - SM_b21249 0.78 +0.5 818,314 - SM_b21249 0.79 +0.1 818,314 - SM_b21249 0.79 -0.3 818,314 - SM_b21249 0.79 +0.1 818,362 + SM_b21249 0.85 +0.2 818,363 - SM_b21249 0.85 -0.0 818,393 - SM_b21249 0.89 +0.8 818,432 + -1.0 818,440 - +0.9 818,534 + +0.4 818,576 - -1.6 818,695 + +0.2 818,695 + -0.0 818,695 + -0.0 818,792 + -0.3 818,827 - +1.3 819,018 - -0.3 819,018 - -0.1 819,031 + SM_b21250 0.10 -0.2 819,032 - SM_b21250 0.11 -1.0 819,032 - SM_b21250 0.11 +0.7 819,176 + SM_b21250 0.22 -0.8 819,456 + SM_b21250 0.44 -0.5 819,456 + SM_b21250 0.44 +0.4 819,457 - SM_b21250 0.44 -0.6 819,457 - SM_b21250 0.44 +0.7 819,458 + SM_b21250 0.44 +0.3 819,458 + SM_b21250 0.44 -0.1
Or see this region's nucleotide sequence