Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21051

Experiment: Paraquat dichloride 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21050 and SM_b21051 are separated by 150 nucleotidesSM_b21051 and SM_b21052 are separated by 303 nucleotides SM_b21050: SM_b21050 - PST type surface saccharide translocase, ExoT protein, at 682,224 to 683,777 _b21050 SM_b21051: SM_b21051 - udpglucosegdpmannose dehydrogenase, at 683,928 to 685,277 _b21051 SM_b21052: SM_b21052 - epimerase dehydratase, at 685,581 to 686,546 _b21052 Position (kb) 683 684 685 686Strain fitness (log2 ratio) -2 -1 0 1at 682.929 kb on + strand, within SM_b21050at 682.990 kb on + strand, within SM_b21050at 683.108 kb on - strand, within SM_b21050at 683.108 kb on - strandat 683.108 kb on - strand, within SM_b21050at 683.323 kb on + strand, within SM_b21050at 683.323 kb on + strand, within SM_b21050at 683.361 kb on + strand, within SM_b21050at 683.361 kb on + strand, within SM_b21050at 683.415 kb on + strand, within SM_b21050at 683.415 kb on + strand, within SM_b21050at 683.416 kb on - strand, within SM_b21050at 683.416 kb on - strand, within SM_b21050at 683.416 kb on - strand, within SM_b21050at 683.418 kb on - strand, within SM_b21050at 683.459 kb on + strand, within SM_b21050at 683.474 kb on - strand, within SM_b21050at 683.474 kb on - strand, within SM_b21050at 683.526 kb on + strand, within SM_b21050at 683.526 kb on + strand, within SM_b21050at 683.526 kb on + strand, within SM_b21050at 683.531 kb on - strand, within SM_b21050at 683.531 kb on - strand, within SM_b21050at 683.531 kb on - strand, within SM_b21050at 683.537 kb on + strand, within SM_b21050at 683.537 kb on + strand, within SM_b21050at 683.538 kb on - strand, within SM_b21050at 683.538 kb on - strand, within SM_b21050at 683.538 kb on - strand, within SM_b21050at 683.546 kb on + strand, within SM_b21050at 683.618 kb on + strand, within SM_b21050at 683.619 kb on - strand, within SM_b21050at 683.700 kb on + strandat 683.700 kb on + strandat 683.700 kb on + strandat 683.700 kb on + strandat 683.701 kb on - strandat 683.701 kb on - strandat 683.701 kb on - strandat 683.701 kb on - strandat 683.701 kb on - strandat 683.761 kb on + strandat 683.761 kb on + strandat 683.761 kb on + strandat 683.762 kb on - strandat 683.858 kb on - strandat 683.858 kb on - strandat 683.858 kb on - strandat 683.883 kb on + strandat 683.884 kb on - strandat 683.899 kb on + strandat 683.900 kb on - strandat 683.930 kb on - strandat 683.930 kb on - strandat 683.937 kb on + strandat 683.938 kb on - strandat 683.945 kb on + strandat 683.945 kb on + strandat 683.946 kb on - strandat 683.946 kb on - strandat 684.089 kb on + strand, within SM_b21051at 684.090 kb on - strand, within SM_b21051at 684.111 kb on + strand, within SM_b21051at 684.112 kb on - strand, within SM_b21051at 684.121 kb on + strand, within SM_b21051at 684.122 kb on - strand, within SM_b21051at 684.147 kb on + strand, within SM_b21051at 684.147 kb on + strand, within SM_b21051at 684.148 kb on - strand, within SM_b21051at 684.151 kb on + strand, within SM_b21051at 684.152 kb on - strand, within SM_b21051at 684.163 kb on + strand, within SM_b21051at 684.164 kb on - strand, within SM_b21051at 684.227 kb on + strand, within SM_b21051at 684.247 kb on + strand, within SM_b21051at 684.247 kb on + strand, within SM_b21051at 684.248 kb on - strand, within SM_b21051at 684.265 kb on - strand, within SM_b21051at 684.334 kb on + strand, within SM_b21051at 684.334 kb on + strand, within SM_b21051at 684.335 kb on - strand, within SM_b21051at 684.366 kb on + strand, within SM_b21051at 684.366 kb on + strand, within SM_b21051at 684.367 kb on - strand, within SM_b21051at 684.372 kb on + strand, within SM_b21051at 684.387 kb on + strand, within SM_b21051at 684.388 kb on - strand, within SM_b21051at 684.388 kb on - strand, within SM_b21051at 684.395 kb on - strand, within SM_b21051at 684.418 kb on + strand, within SM_b21051at 684.419 kb on - strand, within SM_b21051at 684.476 kb on + strand, within SM_b21051at 684.477 kb on - strand, within SM_b21051at 684.477 kb on - strand, within SM_b21051at 684.477 kb on - strand, within SM_b21051at 684.478 kb on + strand, within SM_b21051at 684.479 kb on - strand, within SM_b21051at 684.588 kb on + strand, within SM_b21051at 684.589 kb on - strand, within SM_b21051at 684.589 kb on - strand, within SM_b21051at 684.600 kb on + strand, within SM_b21051at 684.600 kb on + strand, within SM_b21051at 684.664 kb on + strand, within SM_b21051at 684.664 kb on + strand, within SM_b21051at 684.665 kb on - strand, within SM_b21051at 684.665 kb on - strand, within SM_b21051at 684.773 kb on - strand, within SM_b21051at 684.867 kb on + strand, within SM_b21051at 684.867 kb on + strand, within SM_b21051at 684.868 kb on - strand, within SM_b21051at 685.077 kb on + strand, within SM_b21051at 685.077 kb on + strand, within SM_b21051at 685.077 kb on + strand, within SM_b21051at 685.077 kb on + strand, within SM_b21051at 685.078 kb on - strand, within SM_b21051at 685.166 kb on + strandat 685.167 kb on - strandat 685.187 kb on - strandat 685.200 kb on - strandat 685.277 kb on + strandat 685.278 kb on - strandat 685.278 kb on - strandat 685.427 kb on - strandat 685.572 kb on - strandat 685.709 kb on + strand, within SM_b21052at 685.710 kb on - strand, within SM_b21052at 685.745 kb on - strand, within SM_b21052at 685.788 kb on + strand, within SM_b21052at 685.789 kb on - strand, within SM_b21052at 685.878 kb on - strand, within SM_b21052at 685.935 kb on + strand, within SM_b21052at 686.022 kb on + strand, within SM_b21052at 686.023 kb on - strand, within SM_b21052at 686.053 kb on - strand, within SM_b21052at 686.056 kb on + strand, within SM_b21052at 686.056 kb on + strand, within SM_b21052at 686.057 kb on - strand, within SM_b21052at 686.057 kb on - strand, within SM_b21052at 686.057 kb on - strand, within SM_b21052at 686.064 kb on + strand, within SM_b21052at 686.064 kb on + strand, within SM_b21052at 686.065 kb on - strand, within SM_b21052at 686.065 kb on - strand, within SM_b21052at 686.115 kb on + strandat 686.115 kb on + strand, within SM_b21052at 686.115 kb on + strand, within SM_b21052at 686.116 kb on - strand, within SM_b21052at 686.116 kb on - strand, within SM_b21052at 686.116 kb on - strand, within SM_b21052at 686.118 kb on - strand, within SM_b21052at 686.227 kb on - strand, within SM_b21052

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.05 mg/ml
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682,929 + SM_b21050 0.45 +0.7
682,990 + SM_b21050 0.49 -0.5
683,108 - SM_b21050 0.57 -0.3
683,108 - +1.7
683,108 - SM_b21050 0.57 +0.9
683,323 + SM_b21050 0.71 -0.5
683,323 + SM_b21050 0.71 +0.0
683,361 + SM_b21050 0.73 +1.0
683,361 + SM_b21050 0.73 -0.1
683,415 + SM_b21050 0.77 -0.2
683,415 + SM_b21050 0.77 +1.2
683,416 - SM_b21050 0.77 +1.2
683,416 - SM_b21050 0.77 +0.6
683,416 - SM_b21050 0.77 -0.5
683,418 - SM_b21050 0.77 -0.1
683,459 + SM_b21050 0.79 +1.5
683,474 - SM_b21050 0.80 +0.1
683,474 - SM_b21050 0.80 +0.1
683,526 + SM_b21050 0.84 +0.0
683,526 + SM_b21050 0.84 -1.6
683,526 + SM_b21050 0.84 -0.1
683,531 - SM_b21050 0.84 -0.2
683,531 - SM_b21050 0.84 -1.4
683,531 - SM_b21050 0.84 +0.3
683,537 + SM_b21050 0.84 -1.0
683,537 + SM_b21050 0.84 -0.8
683,538 - SM_b21050 0.85 -2.4
683,538 - SM_b21050 0.85 +0.6
683,538 - SM_b21050 0.85 -0.0
683,546 + SM_b21050 0.85 -0.2
683,618 + SM_b21050 0.90 +0.1
683,619 - SM_b21050 0.90 +0.1
683,700 + +0.2
683,700 + +0.4
683,700 + +0.5
683,700 + -0.2
683,701 - -0.3
683,701 - +0.1
683,701 - +0.3
683,701 - -0.1
683,701 - -0.6
683,761 + -0.2
683,761 + -0.3
683,761 + -0.0
683,762 - +1.2
683,858 - +0.1
683,858 - -1.1
683,858 - -0.8
683,883 + -0.2
683,884 - +0.5
683,899 + -0.6
683,900 - +0.1
683,930 - -0.4
683,930 - -2.2
683,937 + +0.4
683,938 - -0.8
683,945 + -0.1
683,945 + +0.2
683,946 - +0.3
683,946 - -1.0
684,089 + SM_b21051 0.12 -0.3
684,090 - SM_b21051 0.12 +0.6
684,111 + SM_b21051 0.14 -0.4
684,112 - SM_b21051 0.14 -0.3
684,121 + SM_b21051 0.14 -0.4
684,122 - SM_b21051 0.14 -0.6
684,147 + SM_b21051 0.16 -0.7
684,147 + SM_b21051 0.16 -0.1
684,148 - SM_b21051 0.16 +1.2
684,151 + SM_b21051 0.17 -0.1
684,152 - SM_b21051 0.17 +0.6
684,163 + SM_b21051 0.17 +0.7
684,164 - SM_b21051 0.17 +1.3
684,227 + SM_b21051 0.22 +0.2
684,247 + SM_b21051 0.24 +0.1
684,247 + SM_b21051 0.24 -1.4
684,248 - SM_b21051 0.24 -0.5
684,265 - SM_b21051 0.25 +0.1
684,334 + SM_b21051 0.30 +0.2
684,334 + SM_b21051 0.30 -0.4
684,335 - SM_b21051 0.30 +1.4
684,366 + SM_b21051 0.32 -0.9
684,366 + SM_b21051 0.32 +0.5
684,367 - SM_b21051 0.33 +0.5
684,372 + SM_b21051 0.33 +0.9
684,387 + SM_b21051 0.34 +0.4
684,388 - SM_b21051 0.34 -0.7
684,388 - SM_b21051 0.34 +0.6
684,395 - SM_b21051 0.35 -0.0
684,418 + SM_b21051 0.36 -0.2
684,419 - SM_b21051 0.36 -1.4
684,476 + SM_b21051 0.41 +0.3
684,477 - SM_b21051 0.41 +0.4
684,477 - SM_b21051 0.41 +1.1
684,477 - SM_b21051 0.41 +0.6
684,478 + SM_b21051 0.41 +0.8
684,479 - SM_b21051 0.41 +1.1
684,588 + SM_b21051 0.49 -0.1
684,589 - SM_b21051 0.49 +1.0
684,589 - SM_b21051 0.49 +0.1
684,600 + SM_b21051 0.50 +0.2
684,600 + SM_b21051 0.50 +0.7
684,664 + SM_b21051 0.55 +0.9
684,664 + SM_b21051 0.55 +1.2
684,665 - SM_b21051 0.55 +0.8
684,665 - SM_b21051 0.55 -0.6
684,773 - SM_b21051 0.63 +0.2
684,867 + SM_b21051 0.70 -0.1
684,867 + SM_b21051 0.70 +0.3
684,868 - SM_b21051 0.70 +1.6
685,077 + SM_b21051 0.85 +1.5
685,077 + SM_b21051 0.85 +1.0
685,077 + SM_b21051 0.85 -0.9
685,077 + SM_b21051 0.85 -0.1
685,078 - SM_b21051 0.85 +0.0
685,166 + -0.3
685,167 - -0.9
685,187 - +0.5
685,200 - +0.4
685,277 + -0.6
685,278 - -0.4
685,278 - -0.2
685,427 - +0.2
685,572 - +0.3
685,709 + SM_b21052 0.13 +0.6
685,710 - SM_b21052 0.13 +0.5
685,745 - SM_b21052 0.17 +1.4
685,788 + SM_b21052 0.21 +0.5
685,789 - SM_b21052 0.22 +0.1
685,878 - SM_b21052 0.31 -0.3
685,935 + SM_b21052 0.37 -0.4
686,022 + SM_b21052 0.46 +0.5
686,023 - SM_b21052 0.46 +0.1
686,053 - SM_b21052 0.49 -0.1
686,056 + SM_b21052 0.49 +0.2
686,056 + SM_b21052 0.49 +1.2
686,057 - SM_b21052 0.49 -1.0
686,057 - SM_b21052 0.49 +0.0
686,057 - SM_b21052 0.49 +0.1
686,064 + SM_b21052 0.50 +0.6
686,064 + SM_b21052 0.50 -0.8
686,065 - SM_b21052 0.50 +0.3
686,065 - SM_b21052 0.50 -1.1
686,115 + -0.6
686,115 + SM_b21052 0.55 +0.2
686,115 + SM_b21052 0.55 -0.7
686,116 - SM_b21052 0.55 +0.2
686,116 - SM_b21052 0.55 +0.6
686,116 - SM_b21052 0.55 +1.5
686,118 - SM_b21052 0.56 -0.3
686,227 - SM_b21052 0.67 +0.0

Or see this region's nucleotide sequence