Experiment: Paraquat dichloride 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21027 and SM_b21028 are separated by 214 nucleotides SM_b21028 and SM_b21029 are separated by 97 nucleotides SM_b21029 and SM_b21030 are separated by 144 nucleotides
SM_b21027: SM_b21027 - hypothetical protein, at 648,788 to 649,504
_b21027
SM_b21028: SM_b21028 - hypothetical protein, at 649,719 to 649,880
_b21028
SM_b21029: SM_b21029 - hypothetical protein, at 649,978 to 650,502
_b21029
SM_b21030: SM_b21030 - hypothetical protein, at 650,647 to 651,096
_b21030
Position (kb) 649
650 Strain fitness (log2 ratio) -2
-1
0
1
2 at 648.731 kb on + strand at 648.756 kb on + strand at 648.773 kb on + strand at 648.796 kb on + strand at 648.796 kb on + strand at 648.861 kb on + strand, within SM_b21027 at 648.861 kb on + strand, within SM_b21027 at 648.861 kb on + strand, within SM_b21027 at 648.861 kb on + strand, within SM_b21027 at 648.862 kb on - strand, within SM_b21027 at 648.862 kb on - strand, within SM_b21027 at 648.877 kb on - strand, within SM_b21027 at 648.879 kb on - strand, within SM_b21027 at 648.879 kb on - strand, within SM_b21027 at 649.172 kb on - strand, within SM_b21027 at 649.172 kb on - strand, within SM_b21027 at 649.172 kb on - strand, within SM_b21027 at 649.175 kb on + strand, within SM_b21027 at 649.176 kb on - strand, within SM_b21027 at 649.176 kb on - strand, within SM_b21027 at 649.176 kb on - strand, within SM_b21027 at 649.420 kb on + strand, within SM_b21027 at 649.447 kb on + strand at 649.560 kb on + strand at 649.560 kb on + strand at 649.560 kb on + strand at 649.561 kb on - strand at 649.611 kb on - strand at 649.644 kb on + strand at 649.645 kb on - strand at 649.654 kb on + strand at 649.657 kb on - strand at 649.657 kb on - strand at 649.707 kb on + strand at 649.707 kb on + strand at 649.707 kb on + strand at 649.708 kb on - strand at 649.708 kb on - strand at 649.711 kb on + strand at 649.712 kb on - strand at 649.712 kb on - strand at 649.758 kb on + strand, within SM_b21028 at 649.825 kb on + strand, within SM_b21028 at 649.845 kb on + strand, within SM_b21028 at 649.846 kb on - strand, within SM_b21028 at 649.900 kb on + strand at 649.900 kb on + strand at 649.901 kb on - strand at 649.925 kb on - strand at 649.929 kb on - strand at 649.936 kb on - strand at 649.936 kb on - strand at 649.977 kb on + strand at 649.977 kb on + strand at 649.977 kb on + strand at 649.977 kb on + strand at 649.977 kb on + strand at 649.978 kb on - strand at 649.978 kb on - strand at 650.129 kb on - strand, within SM_b21029 at 650.136 kb on + strand, within SM_b21029 at 650.214 kb on - strand, within SM_b21029 at 650.281 kb on - strand, within SM_b21029 at 650.345 kb on + strand, within SM_b21029 at 650.346 kb on - strand, within SM_b21029 at 650.436 kb on + strand, within SM_b21029 at 650.436 kb on + strand, within SM_b21029 at 650.437 kb on - strand, within SM_b21029 at 650.437 kb on - strand, within SM_b21029 at 650.500 kb on + strand at 650.500 kb on + strand at 650.550 kb on + strand at 650.550 kb on + strand at 650.551 kb on - strand at 650.556 kb on + strand at 650.556 kb on + strand at 650.556 kb on + strand at 650.556 kb on + strand at 650.557 kb on - strand at 650.589 kb on - strand at 650.754 kb on + strand, within SM_b21030
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.05 mg/ml remove 648,731 + -0.1 648,756 + -0.7 648,773 + -1.1 648,796 + -2.0 648,796 + +0.0 648,861 + SM_b21027 0.10 -0.0 648,861 + SM_b21027 0.10 -0.0 648,861 + SM_b21027 0.10 -0.9 648,861 + SM_b21027 0.10 +0.4 648,862 - SM_b21027 0.10 -1.5 648,862 - SM_b21027 0.10 -0.2 648,877 - SM_b21027 0.12 +0.3 648,879 - SM_b21027 0.13 +0.1 648,879 - SM_b21027 0.13 -1.3 649,172 - SM_b21027 0.54 -0.3 649,172 - SM_b21027 0.54 +0.3 649,172 - SM_b21027 0.54 +0.3 649,175 + SM_b21027 0.54 -0.1 649,176 - SM_b21027 0.54 +1.0 649,176 - SM_b21027 0.54 +0.2 649,176 - SM_b21027 0.54 +0.2 649,420 + SM_b21027 0.88 +0.1 649,447 + -0.8 649,560 + -0.4 649,560 + -0.5 649,560 + -0.6 649,561 - -0.6 649,611 - -2.2 649,644 + +0.0 649,645 - -0.1 649,654 + -0.1 649,657 - +0.0 649,657 - -0.9 649,707 + +0.3 649,707 + -0.1 649,707 + -0.3 649,708 - -1.1 649,708 - +1.0 649,711 + -0.1 649,712 - +0.2 649,712 - -0.5 649,758 + SM_b21028 0.24 -1.2 649,825 + SM_b21028 0.65 -0.6 649,845 + SM_b21028 0.78 -1.3 649,846 - SM_b21028 0.78 -0.3 649,900 + +0.7 649,900 + -0.6 649,901 - +0.4 649,925 - -1.0 649,929 - -0.5 649,936 - +2.2 649,936 - +1.0 649,977 + -0.4 649,977 + +0.5 649,977 + +2.2 649,977 + -0.4 649,977 + -1.1 649,978 - +1.1 649,978 - -0.4 650,129 - SM_b21029 0.29 -1.0 650,136 + SM_b21029 0.30 +0.5 650,214 - SM_b21029 0.45 -0.3 650,281 - SM_b21029 0.58 -0.6 650,345 + SM_b21029 0.70 +0.8 650,346 - SM_b21029 0.70 -0.7 650,436 + SM_b21029 0.87 +0.1 650,436 + SM_b21029 0.87 +0.6 650,437 - SM_b21029 0.87 -0.2 650,437 - SM_b21029 0.87 +0.2 650,500 + -0.2 650,500 + +0.4 650,550 + -1.1 650,550 + -0.7 650,551 - +0.8 650,556 + +0.2 650,556 + -0.3 650,556 + +0.0 650,556 + -0.8 650,557 - +0.5 650,589 - -0.8 650,754 + SM_b21030 0.24 +1.2
Or see this region's nucleotide sequence