Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20953

Experiment: Paraquat dichloride 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20951 and SM_b20952 are separated by 19 nucleotidesSM_b20952 and SM_b20953 are separated by 90 nucleotidesSM_b20953 and SM_b20954 are separated by 138 nucleotides SM_b20951: SM_b20951 - hypothetical protein, at 1,179,773 to 1,180,348 _b20951 SM_b20952: SM_b20952 - hypothetical protein, at 1,180,368 to 1,180,625 _b20952 SM_b20953: SM_b20953 - hypothetical protein, at 1,180,716 to 1,181,099 _b20953 SM_b20954: SM_b20954 - succinyltransferase, at 1,181,238 to 1,182,350 _b20954 Position (kb) 1180 1181 1182Strain fitness (log2 ratio) -3 -2 -1 0 1at 1179.795 kb on + strandat 1179.795 kb on + strandat 1179.796 kb on - strandat 1179.947 kb on - strand, within SM_b20951at 1179.947 kb on - strand, within SM_b20951at 1179.949 kb on + strand, within SM_b20951at 1179.950 kb on - strand, within SM_b20951at 1179.979 kb on + strand, within SM_b20951at 1180.127 kb on + strand, within SM_b20951at 1180.235 kb on + strand, within SM_b20951at 1180.236 kb on - strand, within SM_b20951at 1180.236 kb on - strand, within SM_b20951at 1180.236 kb on - strand, within SM_b20951at 1180.376 kb on - strandat 1180.376 kb on - strandat 1180.436 kb on + strand, within SM_b20952at 1180.436 kb on + strand, within SM_b20952at 1180.436 kb on + strand, within SM_b20952at 1180.436 kb on + strand, within SM_b20952at 1180.436 kb on + strand, within SM_b20952at 1180.437 kb on - strand, within SM_b20952at 1180.437 kb on - strand, within SM_b20952at 1180.437 kb on - strand, within SM_b20952at 1180.437 kb on - strand, within SM_b20952at 1180.437 kb on - strand, within SM_b20952at 1180.437 kb on - strand, within SM_b20952at 1180.638 kb on + strandat 1180.639 kb on - strandat 1180.670 kb on - strandat 1180.859 kb on - strand, within SM_b20953at 1181.150 kb on + strandat 1181.228 kb on + strandat 1181.229 kb on - strandat 1181.237 kb on + strandat 1181.276 kb on + strandat 1181.276 kb on + strandat 1181.277 kb on - strandat 1181.277 kb on - strandat 1181.317 kb on - strandat 1181.349 kb on + strandat 1181.350 kb on - strand, within SM_b20954at 1181.520 kb on - strand, within SM_b20954at 1181.670 kb on + strand, within SM_b20954at 1181.696 kb on + strand, within SM_b20954at 1181.943 kb on + strand, within SM_b20954at 1181.944 kb on - strand, within SM_b20954at 1181.946 kb on + strand, within SM_b20954at 1181.946 kb on + strand, within SM_b20954at 1181.947 kb on - strand, within SM_b20954

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.05 mg/ml
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1,179,795 + +0.1
1,179,795 + -1.0
1,179,796 - -0.1
1,179,947 - SM_b20951 0.30 -0.5
1,179,947 - SM_b20951 0.30 +0.1
1,179,949 + SM_b20951 0.31 -0.2
1,179,950 - SM_b20951 0.31 -1.0
1,179,979 + SM_b20951 0.36 +0.5
1,180,127 + SM_b20951 0.61 -1.0
1,180,235 + SM_b20951 0.80 +0.4
1,180,236 - SM_b20951 0.80 -0.3
1,180,236 - SM_b20951 0.80 +0.3
1,180,236 - SM_b20951 0.80 -1.1
1,180,376 - +0.5
1,180,376 - +0.8
1,180,436 + SM_b20952 0.26 +0.2
1,180,436 + SM_b20952 0.26 -0.9
1,180,436 + SM_b20952 0.26 +0.6
1,180,436 + SM_b20952 0.26 -0.1
1,180,436 + SM_b20952 0.26 +0.8
1,180,437 - SM_b20952 0.27 -0.4
1,180,437 - SM_b20952 0.27 -3.0
1,180,437 - SM_b20952 0.27 -0.2
1,180,437 - SM_b20952 0.27 -0.9
1,180,437 - SM_b20952 0.27 -0.6
1,180,437 - SM_b20952 0.27 +0.5
1,180,638 + +0.3
1,180,639 - -0.2
1,180,670 - -0.5
1,180,859 - SM_b20953 0.37 -1.3
1,181,150 + +1.5
1,181,228 + +0.8
1,181,229 - +0.3
1,181,237 + -0.4
1,181,276 + -0.3
1,181,276 + -0.0
1,181,277 - +0.0
1,181,277 - +1.0
1,181,317 - +0.5
1,181,349 + +0.1
1,181,350 - SM_b20954 0.10 +0.2
1,181,520 - SM_b20954 0.25 +0.4
1,181,670 + SM_b20954 0.39 +0.2
1,181,696 + SM_b20954 0.41 +0.5
1,181,943 + SM_b20954 0.63 +0.7
1,181,944 - SM_b20954 0.63 +1.2
1,181,946 + SM_b20954 0.64 +0.1
1,181,946 + SM_b20954 0.64 +0.5
1,181,947 - SM_b20954 0.64 +0.9

Or see this region's nucleotide sequence