Experiment: Paraquat dichloride 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20873 and SM_b20874 are separated by 96 nucleotides SM_b20874 and SM_b20875 overlap by 1 nucleotides SM_b20875 and SM_b20876 are separated by 77 nucleotides
SM_b20873: SM_b20873 - ureidoglycolate hydrolase, at 1,280,236 to 1,280,748
_b20873
SM_b20874: SM_b20874 - hypothetical protein, at 1,280,845 to 1,281,348
_b20874
SM_b20875: SM_b20875 - hypothetical protein, at 1,281,348 to 1,282,277
_b20875
SM_b20876: SM_b20876 - hypothetical protein, at 1,282,355 to 1,283,152
_b20876
Position (kb)
1281
1282
1283 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1280.389 kb on + strand, within SM_b20873 at 1280.391 kb on - strand, within SM_b20873 at 1280.464 kb on + strand, within SM_b20873 at 1280.552 kb on - strand, within SM_b20873 at 1280.552 kb on - strand, within SM_b20873 at 1280.739 kb on + strand at 1280.739 kb on + strand at 1280.739 kb on + strand at 1280.740 kb on - strand at 1280.740 kb on - strand at 1280.740 kb on - strand at 1281.032 kb on + strand, within SM_b20874 at 1281.032 kb on + strand, within SM_b20874 at 1281.032 kb on + strand, within SM_b20874 at 1281.033 kb on - strand, within SM_b20874 at 1281.272 kb on + strand, within SM_b20874 at 1281.273 kb on - strand, within SM_b20874 at 1281.273 kb on - strand, within SM_b20874 at 1281.439 kb on + strand at 1281.439 kb on + strand at 1281.439 kb on + strand at 1281.545 kb on - strand, within SM_b20875 at 1281.545 kb on - strand at 1281.545 kb on - strand, within SM_b20875 at 1281.545 kb on - strand, within SM_b20875 at 1281.571 kb on + strand, within SM_b20875 at 1281.571 kb on + strand, within SM_b20875 at 1281.571 kb on + strand, within SM_b20875 at 1281.641 kb on + strand, within SM_b20875 at 1281.641 kb on + strand, within SM_b20875 at 1281.644 kb on - strand, within SM_b20875 at 1281.653 kb on + strand, within SM_b20875 at 1281.654 kb on - strand, within SM_b20875 at 1281.784 kb on + strand, within SM_b20875 at 1281.784 kb on + strand, within SM_b20875 at 1281.784 kb on + strand, within SM_b20875 at 1281.785 kb on - strand, within SM_b20875 at 1281.785 kb on - strand, within SM_b20875 at 1281.857 kb on + strand, within SM_b20875 at 1281.877 kb on + strand, within SM_b20875 at 1281.878 kb on - strand, within SM_b20875 at 1281.878 kb on - strand, within SM_b20875 at 1281.976 kb on + strand, within SM_b20875 at 1281.977 kb on - strand, within SM_b20875 at 1281.977 kb on - strand, within SM_b20875 at 1282.046 kb on - strand, within SM_b20875 at 1282.051 kb on + strand, within SM_b20875 at 1282.065 kb on - strand, within SM_b20875 at 1282.171 kb on + strand, within SM_b20875 at 1282.172 kb on - strand, within SM_b20875 at 1282.308 kb on - strand at 1283.007 kb on + strand, within SM_b20876 at 1283.007 kb on + strand at 1283.007 kb on + strand, within SM_b20876 at 1283.008 kb on - strand, within SM_b20876 at 1283.145 kb on + strand at 1283.185 kb on + strand at 1283.186 kb on - strand at 1283.238 kb on + strand at 1283.267 kb on + strand at 1283.268 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.05 mg/ml remove 1,280,389 + SM_b20873 0.30 -0.1 1,280,391 - SM_b20873 0.30 -0.8 1,280,464 + SM_b20873 0.44 +1.2 1,280,552 - SM_b20873 0.62 +0.1 1,280,552 - SM_b20873 0.62 +0.6 1,280,739 + +0.4 1,280,739 + +0.2 1,280,739 + -0.2 1,280,740 - -0.4 1,280,740 - -0.5 1,280,740 - -0.3 1,281,032 + SM_b20874 0.37 -0.6 1,281,032 + SM_b20874 0.37 -0.4 1,281,032 + SM_b20874 0.37 -0.0 1,281,033 - SM_b20874 0.37 -1.6 1,281,272 + SM_b20874 0.85 -0.3 1,281,273 - SM_b20874 0.85 +0.4 1,281,273 - SM_b20874 0.85 -0.3 1,281,439 + -1.0 1,281,439 + -2.2 1,281,439 + -0.4 1,281,545 - SM_b20875 0.21 -1.8 1,281,545 - +1.1 1,281,545 - SM_b20875 0.21 -1.0 1,281,545 - SM_b20875 0.21 -0.5 1,281,571 + SM_b20875 0.24 +0.8 1,281,571 + SM_b20875 0.24 +0.4 1,281,571 + SM_b20875 0.24 -0.5 1,281,641 + SM_b20875 0.32 +0.2 1,281,641 + SM_b20875 0.32 -0.5 1,281,644 - SM_b20875 0.32 +0.7 1,281,653 + SM_b20875 0.33 +0.0 1,281,654 - SM_b20875 0.33 -1.1 1,281,784 + SM_b20875 0.47 -0.2 1,281,784 + SM_b20875 0.47 +0.1 1,281,784 + SM_b20875 0.47 +1.1 1,281,785 - SM_b20875 0.47 -0.7 1,281,785 - SM_b20875 0.47 -1.3 1,281,857 + SM_b20875 0.55 +0.2 1,281,877 + SM_b20875 0.57 -0.2 1,281,878 - SM_b20875 0.57 +0.4 1,281,878 - SM_b20875 0.57 -0.5 1,281,976 + SM_b20875 0.68 -0.0 1,281,977 - SM_b20875 0.68 -0.7 1,281,977 - SM_b20875 0.68 +0.4 1,282,046 - SM_b20875 0.75 -0.8 1,282,051 + SM_b20875 0.76 -0.8 1,282,065 - SM_b20875 0.77 -0.2 1,282,171 + SM_b20875 0.88 +0.4 1,282,172 - SM_b20875 0.89 +0.4 1,282,308 - +1.1 1,283,007 + SM_b20876 0.82 -0.1 1,283,007 + +1.2 1,283,007 + SM_b20876 0.82 -0.1 1,283,008 - SM_b20876 0.82 -0.4 1,283,145 + -0.7 1,283,185 + +1.2 1,283,186 - -0.3 1,283,238 + -1.1 1,283,267 + -0.6 1,283,268 - +2.2
Or see this region's nucleotide sequence