Experiment: Paraquat dichloride 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20832 and SM_b20833 overlap by 4 nucleotides SM_b20833 and SM_b20834 overlap by 4 nucleotides
SM_b20832: SM_b20832 - cell surface polysaccharide export ABC-2 transporter ATP-binding protein, at 624,306 to 624,965
_b20832
SM_b20833: SM_b20833 - cell surface polysaccharide export ABC-2 transporter permease, close relative of Y20822wzm2, at 624,962 to 625,741
_b20833
SM_b20834: SM_b20834 - surface saccharide synthesis protein, at 625,738 to 627,036
_b20834
Position (kb) 624
625
626 Strain fitness (log2 ratio) -2
-1
0
1
2 at 625.038 kb on + strand at 625.044 kb on + strand, within SM_b20833 at 625.045 kb on - strand, within SM_b20833 at 625.081 kb on - strand, within SM_b20833 at 625.185 kb on - strand, within SM_b20833 at 625.227 kb on + strand, within SM_b20833 at 625.236 kb on + strand, within SM_b20833 at 625.236 kb on + strand, within SM_b20833 at 625.236 kb on + strand, within SM_b20833 at 625.237 kb on - strand at 625.327 kb on + strand, within SM_b20833 at 625.527 kb on + strand, within SM_b20833 at 625.527 kb on + strand, within SM_b20833 at 625.527 kb on + strand, within SM_b20833 at 625.528 kb on - strand, within SM_b20833 at 625.644 kb on + strand, within SM_b20833 at 625.725 kb on + strand at 625.751 kb on + strand at 625.757 kb on - strand at 625.757 kb on - strand at 625.757 kb on - strand at 625.775 kb on + strand at 625.776 kb on - strand at 625.776 kb on - strand at 625.849 kb on + strand at 625.850 kb on - strand at 625.910 kb on + strand, within SM_b20834 at 625.911 kb on - strand, within SM_b20834 at 626.043 kb on - strand, within SM_b20834 at 626.043 kb on - strand, within SM_b20834 at 626.051 kb on + strand, within SM_b20834 at 626.051 kb on + strand, within SM_b20834 at 626.051 kb on + strand, within SM_b20834 at 626.138 kb on + strand, within SM_b20834 at 626.138 kb on + strand, within SM_b20834 at 626.138 kb on + strand, within SM_b20834 at 626.139 kb on - strand, within SM_b20834 at 626.211 kb on + strand, within SM_b20834 at 626.211 kb on + strand, within SM_b20834 at 626.211 kb on + strand, within SM_b20834 at 626.212 kb on - strand, within SM_b20834 at 626.212 kb on - strand, within SM_b20834 at 626.212 kb on - strand, within SM_b20834 at 626.213 kb on + strand, within SM_b20834 at 626.214 kb on - strand, within SM_b20834 at 626.214 kb on - strand, within SM_b20834 at 626.489 kb on + strand, within SM_b20834 at 626.490 kb on - strand, within SM_b20834 at 626.525 kb on + strand, within SM_b20834 at 626.525 kb on + strand, within SM_b20834 at 626.526 kb on - strand, within SM_b20834 at 626.547 kb on + strand, within SM_b20834 at 626.606 kb on + strand, within SM_b20834 at 626.654 kb on + strand, within SM_b20834 at 626.654 kb on + strand, within SM_b20834 at 626.737 kb on + strand, within SM_b20834 at 626.738 kb on - strand, within SM_b20834 at 626.738 kb on - strand, within SM_b20834
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.05 mg/ml remove 625,038 + -1.0 625,044 + SM_b20833 0.11 -0.8 625,045 - SM_b20833 0.11 +0.6 625,081 - SM_b20833 0.15 -0.4 625,185 - SM_b20833 0.29 -0.4 625,227 + SM_b20833 0.34 -0.7 625,236 + SM_b20833 0.35 +0.1 625,236 + SM_b20833 0.35 -0.5 625,236 + SM_b20833 0.35 -0.9 625,237 - +0.2 625,327 + SM_b20833 0.47 -1.4 625,527 + SM_b20833 0.72 -0.2 625,527 + SM_b20833 0.72 +0.2 625,527 + SM_b20833 0.72 -1.3 625,528 - SM_b20833 0.73 -0.4 625,644 + SM_b20833 0.87 -0.3 625,725 + -0.3 625,751 + +0.2 625,757 - -0.7 625,757 - -0.2 625,757 - -0.5 625,775 + +0.1 625,776 - -1.6 625,776 - -0.6 625,849 + -1.3 625,850 - -1.9 625,910 + SM_b20834 0.13 +1.0 625,911 - SM_b20834 0.13 -0.4 626,043 - SM_b20834 0.23 -1.5 626,043 - SM_b20834 0.23 +0.1 626,051 + SM_b20834 0.24 -0.4 626,051 + SM_b20834 0.24 +0.2 626,051 + SM_b20834 0.24 -0.4 626,138 + SM_b20834 0.31 +0.2 626,138 + SM_b20834 0.31 +0.5 626,138 + SM_b20834 0.31 +0.1 626,139 - SM_b20834 0.31 +0.1 626,211 + SM_b20834 0.36 +0.0 626,211 + SM_b20834 0.36 -0.6 626,211 + SM_b20834 0.36 +0.5 626,212 - SM_b20834 0.36 -0.4 626,212 - SM_b20834 0.36 +0.8 626,212 - SM_b20834 0.36 -1.0 626,213 + SM_b20834 0.37 -0.4 626,214 - SM_b20834 0.37 -0.2 626,214 - SM_b20834 0.37 +1.2 626,489 + SM_b20834 0.58 +0.3 626,490 - SM_b20834 0.58 -0.2 626,525 + SM_b20834 0.61 -0.7 626,525 + SM_b20834 0.61 +1.2 626,526 - SM_b20834 0.61 +0.6 626,547 + SM_b20834 0.62 -0.4 626,606 + SM_b20834 0.67 +0.2 626,654 + SM_b20834 0.71 +0.6 626,654 + SM_b20834 0.71 +1.8 626,737 + SM_b20834 0.77 +0.1 626,738 - SM_b20834 0.77 -0.0 626,738 - SM_b20834 0.77 -0.3
Or see this region's nucleotide sequence