Experiment: Paraquat dichloride 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20699 and SM_b20700 are separated by 86 nucleotides SM_b20700 and SM_b20701 are separated by 76 nucleotides SM_b20701 and SM_b20702 are separated by 182 nucleotides
SM_b20699: SM_b20699 - protein secretion protein, at 1,500,350 to 1,501,447
_b20699
SM_b20700: SM_b20700 - hypothetical protein, at 1,501,534 to 1,501,947
_b20700
SM_b20701: SM_b20701 - hypothetical protein, at 1,502,024 to 1,502,776
_b20701
SM_b20702: SM_b20702 - regulatory protein, at 1,502,959 to 1,504,623
_b20702
Position (kb)
1502
1503 Strain fitness (log2 ratio)
-1
0
1
2 at 1501.247 kb on - strand, within SM_b20699 at 1501.263 kb on + strand, within SM_b20699 at 1501.264 kb on - strand, within SM_b20699 at 1501.631 kb on - strand, within SM_b20700 at 1501.631 kb on - strand, within SM_b20700 at 1501.631 kb on - strand, within SM_b20700 at 1501.631 kb on - strand, within SM_b20700 at 1501.679 kb on + strand, within SM_b20700 at 1501.680 kb on - strand, within SM_b20700 at 1501.680 kb on - strand, within SM_b20700 at 1501.680 kb on - strand, within SM_b20700 at 1501.740 kb on - strand at 1501.740 kb on - strand, within SM_b20700 at 1501.740 kb on - strand, within SM_b20700 at 1501.740 kb on - strand, within SM_b20700 at 1501.793 kb on + strand, within SM_b20700 at 1501.794 kb on - strand, within SM_b20700 at 1501.853 kb on - strand, within SM_b20700 at 1502.404 kb on - strand, within SM_b20701 at 1502.969 kb on - strand at 1502.975 kb on + strand at 1502.975 kb on + strand at 1502.975 kb on + strand at 1502.976 kb on - strand at 1502.978 kb on + strand at 1502.978 kb on + strand at 1503.049 kb on + strand at 1503.050 kb on - strand at 1503.050 kb on - strand at 1503.050 kb on - strand at 1503.380 kb on + strand, within SM_b20702 at 1503.491 kb on - strand, within SM_b20702 at 1503.576 kb on + strand, within SM_b20702 at 1503.576 kb on + strand, within SM_b20702 at 1503.577 kb on - strand, within SM_b20702 at 1503.580 kb on + strand, within SM_b20702 at 1503.583 kb on - strand, within SM_b20702 at 1503.583 kb on - strand, within SM_b20702 at 1503.634 kb on + strand, within SM_b20702 at 1503.634 kb on + strand, within SM_b20702 at 1503.635 kb on - strand, within SM_b20702 at 1503.635 kb on - strand, within SM_b20702
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.05 mg/ml remove 1,501,247 - SM_b20699 0.82 +0.7 1,501,263 + SM_b20699 0.83 -0.3 1,501,264 - SM_b20699 0.83 -0.2 1,501,631 - SM_b20700 0.23 -0.4 1,501,631 - SM_b20700 0.23 -0.9 1,501,631 - SM_b20700 0.23 -0.7 1,501,631 - SM_b20700 0.23 -0.1 1,501,679 + SM_b20700 0.35 -1.3 1,501,680 - SM_b20700 0.35 -0.1 1,501,680 - SM_b20700 0.35 -0.0 1,501,680 - SM_b20700 0.35 -0.5 1,501,740 - +1.3 1,501,740 - SM_b20700 0.50 +1.1 1,501,740 - SM_b20700 0.50 -0.7 1,501,740 - SM_b20700 0.50 +1.6 1,501,793 + SM_b20700 0.63 +0.8 1,501,794 - SM_b20700 0.63 -0.6 1,501,853 - SM_b20700 0.77 +0.7 1,502,404 - SM_b20701 0.50 -1.1 1,502,969 - +0.0 1,502,975 + +0.4 1,502,975 + -0.1 1,502,975 + +1.0 1,502,976 - -0.2 1,502,978 + +0.2 1,502,978 + -0.1 1,503,049 + -0.6 1,503,050 - +0.5 1,503,050 - -0.1 1,503,050 - +0.3 1,503,380 + SM_b20702 0.25 -0.3 1,503,491 - SM_b20702 0.32 -0.9 1,503,576 + SM_b20702 0.37 +0.1 1,503,576 + SM_b20702 0.37 -1.1 1,503,577 - SM_b20702 0.37 +0.2 1,503,580 + SM_b20702 0.37 -0.1 1,503,583 - SM_b20702 0.37 -0.1 1,503,583 - SM_b20702 0.37 -0.5 1,503,634 + SM_b20702 0.41 +2.0 1,503,634 + SM_b20702 0.41 +0.1 1,503,635 - SM_b20702 0.41 +0.1 1,503,635 - SM_b20702 0.41 -0.2
Or see this region's nucleotide sequence