Experiment: Paraquat dichloride 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21707 and SM_b20602 are separated by 18 nucleotides SM_b20602 and SM_b20603 are separated by 5 nucleotides SM_b20603 and SM_b20604 overlap by 4 nucleotides
SM_b21707: SM_b21707 - branched-chain amino acid ABC transporter ATP-binding protein, at 1,614,675 to 1,615,370
_b21707
SM_b20602: SM_b20602 - branched-chain amino acid ABC transporter ATP-binding protein, at 1,615,389 to 1,616,141
_b20602
SM_b20603: SM_b20603 - branched-chain amino acid ABC transporter permease, at 1,616,147 to 1,617,322
_b20603
SM_b20604: SM_b20604 - branched-chain amino acid ABC transporter permease, at 1,617,319 to 1,618,932
_b20604
Position (kb)
1616
1617
1618 Strain fitness (log2 ratio)
-1
0
1
2 at 1615.340 kb on - strand at 1615.402 kb on + strand at 1615.402 kb on + strand at 1615.402 kb on + strand at 1615.402 kb on + strand at 1615.402 kb on + strand at 1615.403 kb on - strand at 1615.778 kb on - strand, within SM_b20602 at 1615.778 kb on - strand, within SM_b20602 at 1615.842 kb on - strand, within SM_b20602 at 1616.047 kb on - strand, within SM_b20602 at 1616.110 kb on + strand at 1616.110 kb on + strand at 1616.111 kb on - strand at 1616.111 kb on - strand at 1616.248 kb on - strand at 1616.351 kb on + strand, within SM_b20603 at 1616.351 kb on + strand, within SM_b20603 at 1616.351 kb on + strand, within SM_b20603 at 1616.352 kb on - strand, within SM_b20603 at 1616.352 kb on - strand, within SM_b20603 at 1616.429 kb on + strand, within SM_b20603 at 1616.429 kb on + strand, within SM_b20603 at 1616.429 kb on + strand, within SM_b20603 at 1616.430 kb on - strand, within SM_b20603 at 1616.430 kb on - strand, within SM_b20603 at 1616.430 kb on - strand, within SM_b20603 at 1616.430 kb on - strand, within SM_b20603 at 1616.496 kb on + strand, within SM_b20603 at 1616.497 kb on - strand, within SM_b20603 at 1616.811 kb on + strand, within SM_b20603 at 1616.811 kb on + strand, within SM_b20603 at 1616.812 kb on - strand, within SM_b20603 at 1616.841 kb on + strand, within SM_b20603 at 1616.841 kb on + strand, within SM_b20603 at 1616.842 kb on - strand, within SM_b20603 at 1616.842 kb on - strand, within SM_b20603 at 1616.842 kb on - strand, within SM_b20603 at 1617.016 kb on - strand, within SM_b20603 at 1617.048 kb on + strand, within SM_b20603 at 1617.049 kb on - strand, within SM_b20603 at 1617.049 kb on - strand, within SM_b20603 at 1617.049 kb on - strand, within SM_b20603 at 1617.049 kb on - strand, within SM_b20603 at 1617.153 kb on + strand, within SM_b20603 at 1617.153 kb on + strand, within SM_b20603 at 1617.154 kb on - strand, within SM_b20603 at 1617.154 kb on - strand, within SM_b20603 at 1617.162 kb on + strand, within SM_b20603 at 1617.163 kb on - strand, within SM_b20603 at 1617.186 kb on + strand, within SM_b20603 at 1617.187 kb on - strand, within SM_b20603 at 1617.532 kb on + strand, within SM_b20604 at 1617.533 kb on - strand, within SM_b20604 at 1617.533 kb on - strand, within SM_b20604 at 1617.536 kb on + strand, within SM_b20604 at 1617.537 kb on - strand, within SM_b20604 at 1617.895 kb on + strand, within SM_b20604 at 1617.895 kb on + strand, within SM_b20604 at 1617.985 kb on - strand, within SM_b20604 at 1617.985 kb on - strand, within SM_b20604 at 1618.077 kb on + strand, within SM_b20604 at 1618.077 kb on + strand, within SM_b20604 at 1618.079 kb on + strand, within SM_b20604 at 1618.079 kb on + strand, within SM_b20604 at 1618.080 kb on - strand, within SM_b20604 at 1618.194 kb on - strand, within SM_b20604 at 1618.194 kb on - strand, within SM_b20604 at 1618.197 kb on + strand, within SM_b20604 at 1618.198 kb on + strand, within SM_b20604 at 1618.198 kb on + strand, within SM_b20604 at 1618.199 kb on - strand, within SM_b20604 at 1618.199 kb on - strand, within SM_b20604 at 1618.199 kb on - strand, within SM_b20604 at 1618.199 kb on - strand, within SM_b20604 at 1618.199 kb on - strand, within SM_b20604
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.05 mg/ml remove 1,615,340 - -1.3 1,615,402 + -0.5 1,615,402 + -0.3 1,615,402 + -0.9 1,615,402 + -0.2 1,615,402 + -0.2 1,615,403 - +0.9 1,615,778 - SM_b20602 0.52 -0.8 1,615,778 - SM_b20602 0.52 +0.5 1,615,842 - SM_b20602 0.60 -0.3 1,616,047 - SM_b20602 0.87 -1.2 1,616,110 + +0.3 1,616,110 + -0.3 1,616,111 - -0.5 1,616,111 - -0.3 1,616,248 - +0.0 1,616,351 + SM_b20603 0.17 +1.6 1,616,351 + SM_b20603 0.17 +1.5 1,616,351 + SM_b20603 0.17 -0.5 1,616,352 - SM_b20603 0.17 -0.2 1,616,352 - SM_b20603 0.17 +0.2 1,616,429 + SM_b20603 0.24 -0.1 1,616,429 + SM_b20603 0.24 +0.1 1,616,429 + SM_b20603 0.24 -0.1 1,616,430 - SM_b20603 0.24 +1.3 1,616,430 - SM_b20603 0.24 -0.3 1,616,430 - SM_b20603 0.24 +0.2 1,616,430 - SM_b20603 0.24 +1.9 1,616,496 + SM_b20603 0.30 -0.2 1,616,497 - SM_b20603 0.30 +1.2 1,616,811 + SM_b20603 0.56 -0.5 1,616,811 + SM_b20603 0.56 +0.3 1,616,812 - SM_b20603 0.57 +0.6 1,616,841 + SM_b20603 0.59 -0.0 1,616,841 + SM_b20603 0.59 +2.3 1,616,842 - SM_b20603 0.59 -0.3 1,616,842 - SM_b20603 0.59 -0.9 1,616,842 - SM_b20603 0.59 -1.6 1,617,016 - SM_b20603 0.74 +0.3 1,617,048 + SM_b20603 0.77 +0.4 1,617,049 - SM_b20603 0.77 -0.3 1,617,049 - SM_b20603 0.77 +0.3 1,617,049 - SM_b20603 0.77 +0.3 1,617,049 - SM_b20603 0.77 +0.2 1,617,153 + SM_b20603 0.86 +0.7 1,617,153 + SM_b20603 0.86 +0.4 1,617,154 - SM_b20603 0.86 +0.9 1,617,154 - SM_b20603 0.86 +0.5 1,617,162 + SM_b20603 0.86 +0.8 1,617,163 - SM_b20603 0.86 +0.5 1,617,186 + SM_b20603 0.88 -0.5 1,617,187 - SM_b20603 0.88 +0.8 1,617,532 + SM_b20604 0.13 +0.6 1,617,533 - SM_b20604 0.13 -0.2 1,617,533 - SM_b20604 0.13 +0.2 1,617,536 + SM_b20604 0.13 +0.7 1,617,537 - SM_b20604 0.14 +0.3 1,617,895 + SM_b20604 0.36 -1.7 1,617,895 + SM_b20604 0.36 +0.8 1,617,985 - SM_b20604 0.41 +0.4 1,617,985 - SM_b20604 0.41 +0.7 1,618,077 + SM_b20604 0.47 +0.1 1,618,077 + SM_b20604 0.47 -0.3 1,618,079 + SM_b20604 0.47 -0.2 1,618,079 + SM_b20604 0.47 -0.1 1,618,080 - SM_b20604 0.47 +0.0 1,618,194 - SM_b20604 0.54 -0.3 1,618,194 - SM_b20604 0.54 +0.8 1,618,197 + SM_b20604 0.54 +0.1 1,618,198 + SM_b20604 0.54 -0.5 1,618,198 + SM_b20604 0.54 +0.2 1,618,199 - SM_b20604 0.55 -0.4 1,618,199 - SM_b20604 0.55 +0.1 1,618,199 - SM_b20604 0.55 -0.1 1,618,199 - SM_b20604 0.55 -0.1 1,618,199 - SM_b20604 0.55 -0.5
Or see this region's nucleotide sequence