Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20521

Experiment: Paraquat dichloride 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20520 and SM_b20521 are separated by 292 nucleotidesSM_b20521 and SM_b20522 are separated by 291 nucleotides SM_b20520: SM_b20520 - hypothetical protein, at 546,127 to 546,684 _b20520 SM_b20521: SM_b20521 - hypothetical protein, at 546,977 to 548,086 _b20521 SM_b20522: SM_b20522 - hypothetical protein, at 548,378 to 548,746 _b20522 Position (kb) 546 547 548 549Strain fitness (log2 ratio) -2 -1 0 1at 546.025 kb on + strandat 546.209 kb on + strand, within SM_b20520at 546.209 kb on + strand, within SM_b20520at 546.210 kb on - strand, within SM_b20520at 546.210 kb on - strand, within SM_b20520at 546.225 kb on + strand, within SM_b20520at 546.250 kb on + strand, within SM_b20520at 546.250 kb on + strand, within SM_b20520at 546.250 kb on + strand, within SM_b20520at 546.250 kb on + strand, within SM_b20520at 546.250 kb on + strand, within SM_b20520at 546.250 kb on + strand, within SM_b20520at 546.251 kb on - strand, within SM_b20520at 546.251 kb on - strand, within SM_b20520at 546.251 kb on - strand, within SM_b20520at 546.251 kb on - strand, within SM_b20520at 546.251 kb on - strand, within SM_b20520at 546.341 kb on + strand, within SM_b20520at 546.342 kb on - strand, within SM_b20520at 546.456 kb on + strand, within SM_b20520at 546.457 kb on - strand, within SM_b20520at 546.603 kb on + strand, within SM_b20520at 546.603 kb on + strand, within SM_b20520at 546.604 kb on - strand, within SM_b20520at 546.725 kb on + strandat 546.726 kb on - strandat 546.840 kb on + strandat 546.840 kb on + strandat 546.840 kb on + strandat 546.841 kb on - strandat 546.943 kb on - strandat 546.962 kb on + strandat 546.962 kb on + strandat 546.963 kb on - strandat 546.963 kb on - strandat 547.129 kb on + strand, within SM_b20521at 547.129 kb on + strand, within SM_b20521at 547.157 kb on + strand, within SM_b20521at 547.157 kb on + strand, within SM_b20521at 547.157 kb on + strand, within SM_b20521at 547.157 kb on + strand, within SM_b20521at 547.311 kb on + strand, within SM_b20521at 547.311 kb on + strand, within SM_b20521at 547.312 kb on - strand, within SM_b20521at 547.440 kb on + strand, within SM_b20521at 547.441 kb on - strand, within SM_b20521at 547.441 kb on - strand, within SM_b20521at 547.544 kb on + strand, within SM_b20521at 547.545 kb on - strand, within SM_b20521at 547.583 kb on + strand, within SM_b20521at 547.583 kb on + strand, within SM_b20521at 547.769 kb on + strand, within SM_b20521at 547.770 kb on - strand, within SM_b20521at 547.770 kb on - strand, within SM_b20521at 547.804 kb on + strand, within SM_b20521at 547.804 kb on + strand, within SM_b20521at 547.804 kb on + strand, within SM_b20521at 547.868 kb on + strand, within SM_b20521at 547.868 kb on + strand, within SM_b20521at 547.868 kb on + strand, within SM_b20521at 547.868 kb on + strand, within SM_b20521at 547.869 kb on - strand, within SM_b20521at 547.869 kb on - strand, within SM_b20521at 547.869 kb on - strand, within SM_b20521at 547.869 kb on - strand, within SM_b20521at 547.913 kb on + strand, within SM_b20521at 547.915 kb on + strand, within SM_b20521at 547.934 kb on + strand, within SM_b20521at 547.935 kb on - strand, within SM_b20521at 548.102 kb on + strandat 548.106 kb on + strandat 548.107 kb on - strandat 548.107 kb on - strandat 548.165 kb on - strandat 548.353 kb on - strandat 548.363 kb on + strandat 548.414 kb on - strandat 548.433 kb on + strand, within SM_b20522at 548.434 kb on - strand, within SM_b20522at 548.476 kb on + strand, within SM_b20522at 548.519 kb on + strand, within SM_b20522at 548.520 kb on - strand, within SM_b20522at 548.520 kb on - strand, within SM_b20522at 548.520 kb on - strand, within SM_b20522at 548.544 kb on + strand, within SM_b20522at 548.594 kb on + strand, within SM_b20522at 548.595 kb on - strand, within SM_b20522at 548.595 kb on - strand, within SM_b20522at 548.595 kb on - strand, within SM_b20522at 548.678 kb on + strand, within SM_b20522at 548.679 kb on - strand, within SM_b20522at 548.712 kb on - strandat 548.717 kb on + strandat 548.718 kb on - strandat 548.718 kb on - strandat 548.720 kb on + strandat 548.720 kb on + strandat 548.721 kb on - strandat 548.721 kb on - strandat 548.727 kb on + strandat 548.727 kb on + strandat 548.728 kb on - strandat 548.736 kb on - strandat 548.736 kb on - strandat 548.743 kb on - strandat 548.743 kb on - strandat 548.928 kb on + strandat 548.948 kb on + strandat 548.949 kb on - strandat 548.973 kb on - strandat 549.063 kb on + strandat 549.064 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.05 mg/ml
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546,025 + -0.9
546,209 + SM_b20520 0.15 -0.8
546,209 + SM_b20520 0.15 -0.1
546,210 - SM_b20520 0.15 +1.2
546,210 - SM_b20520 0.15 +0.1
546,225 + SM_b20520 0.18 -0.7
546,250 + SM_b20520 0.22 +0.0
546,250 + SM_b20520 0.22 -0.2
546,250 + SM_b20520 0.22 +0.3
546,250 + SM_b20520 0.22 +1.0
546,250 + SM_b20520 0.22 -0.7
546,250 + SM_b20520 0.22 -0.1
546,251 - SM_b20520 0.22 +0.6
546,251 - SM_b20520 0.22 +0.1
546,251 - SM_b20520 0.22 -0.1
546,251 - SM_b20520 0.22 -0.3
546,251 - SM_b20520 0.22 -0.2
546,341 + SM_b20520 0.38 +0.7
546,342 - SM_b20520 0.39 -0.3
546,456 + SM_b20520 0.59 -1.3
546,457 - SM_b20520 0.59 +0.7
546,603 + SM_b20520 0.85 +0.1
546,603 + SM_b20520 0.85 -0.6
546,604 - SM_b20520 0.85 -1.0
546,725 + +0.8
546,726 - -0.1
546,840 + -0.0
546,840 + +0.1
546,840 + -0.1
546,841 - -0.2
546,943 - -0.2
546,962 + +0.1
546,962 + +0.3
546,963 - -0.4
546,963 - -0.7
547,129 + SM_b20521 0.14 -0.3
547,129 + SM_b20521 0.14 -0.3
547,157 + SM_b20521 0.16 -0.6
547,157 + SM_b20521 0.16 +0.5
547,157 + SM_b20521 0.16 -0.2
547,157 + SM_b20521 0.16 -0.6
547,311 + SM_b20521 0.30 -1.4
547,311 + SM_b20521 0.30 +0.7
547,312 - SM_b20521 0.30 -0.7
547,440 + SM_b20521 0.42 -0.5
547,441 - SM_b20521 0.42 +0.2
547,441 - SM_b20521 0.42 +1.3
547,544 + SM_b20521 0.51 -0.5
547,545 - SM_b20521 0.51 +0.2
547,583 + SM_b20521 0.55 -1.1
547,583 + SM_b20521 0.55 +0.0
547,769 + SM_b20521 0.71 +0.4
547,770 - SM_b20521 0.71 -0.1
547,770 - SM_b20521 0.71 +0.1
547,804 + SM_b20521 0.75 -0.3
547,804 + SM_b20521 0.75 -0.3
547,804 + SM_b20521 0.75 -0.4
547,868 + SM_b20521 0.80 -0.8
547,868 + SM_b20521 0.80 -0.3
547,868 + SM_b20521 0.80 +0.3
547,868 + SM_b20521 0.80 -0.3
547,869 - SM_b20521 0.80 -0.5
547,869 - SM_b20521 0.80 -0.1
547,869 - SM_b20521 0.80 -1.5
547,869 - SM_b20521 0.80 +0.3
547,913 + SM_b20521 0.84 -0.4
547,915 + SM_b20521 0.85 +0.7
547,934 + SM_b20521 0.86 -1.8
547,935 - SM_b20521 0.86 -0.1
548,102 + +0.3
548,106 + +0.3
548,107 - -0.4
548,107 - -0.3
548,165 - +0.1
548,353 - +0.5
548,363 + +0.7
548,414 - -0.5
548,433 + SM_b20522 0.15 -0.2
548,434 - SM_b20522 0.15 +0.9
548,476 + SM_b20522 0.27 -0.7
548,519 + SM_b20522 0.38 -0.7
548,520 - SM_b20522 0.38 -0.3
548,520 - SM_b20522 0.38 +0.7
548,520 - SM_b20522 0.38 -0.3
548,544 + SM_b20522 0.45 -0.8
548,594 + SM_b20522 0.59 +1.1
548,595 - SM_b20522 0.59 -0.2
548,595 - SM_b20522 0.59 -0.4
548,595 - SM_b20522 0.59 +0.4
548,678 + SM_b20522 0.81 -0.4
548,679 - SM_b20522 0.82 +0.5
548,712 - +0.4
548,717 + -0.2
548,718 - -0.2
548,718 - +0.2
548,720 + -0.3
548,720 + -0.2
548,721 - +1.1
548,721 - +0.1
548,727 + -0.8
548,727 + -0.3
548,728 - +0.2
548,736 - -0.7
548,736 - +1.4
548,743 - +0.4
548,743 - +0.2
548,928 + +0.3
548,948 + +0.8
548,949 - -0.2
548,973 - +1.3
549,063 + +0.1
549,064 - -0.5

Or see this region's nucleotide sequence