Experiment: Paraquat dichloride 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20404 and SM_b20405 are separated by 12 nucleotides SM_b20405 and SM_b20406 are separated by 127 nucleotides
SM_b20404: SM_b20404 - aldehyde dehydrogenase, at 416,859 to 419,099
_b20404
SM_b20405: SM_b20405 - transcriptional regulator, at 419,112 to 419,891
_b20405
SM_b20406: SM_b20406 - 5-oxoprolinase, at 420,019 to 422,133
_b20406
Position (kb) 419
420 Strain fitness (log2 ratio) -1
0
1
2 at 418.162 kb on - strand, within SM_b20404 at 418.162 kb on - strand, within SM_b20404 at 418.320 kb on - strand, within SM_b20404 at 418.320 kb on - strand, within SM_b20404 at 418.320 kb on - strand, within SM_b20404 at 418.365 kb on - strand, within SM_b20404 at 418.384 kb on + strand, within SM_b20404 at 418.384 kb on + strand, within SM_b20404 at 418.385 kb on - strand, within SM_b20404 at 418.385 kb on - strand, within SM_b20404 at 418.464 kb on + strand, within SM_b20404 at 418.662 kb on - strand, within SM_b20404 at 418.837 kb on - strand, within SM_b20404 at 419.060 kb on + strand at 419.182 kb on + strand at 419.183 kb on - strand at 419.183 kb on - strand at 419.183 kb on - strand at 419.530 kb on - strand, within SM_b20405 at 419.581 kb on + strand, within SM_b20405 at 419.581 kb on + strand, within SM_b20405 at 419.676 kb on + strand, within SM_b20405 at 419.677 kb on - strand, within SM_b20405 at 419.680 kb on + strand, within SM_b20405 at 419.680 kb on + strand, within SM_b20405 at 419.680 kb on + strand, within SM_b20405 at 419.680 kb on + strand, within SM_b20405 at 419.681 kb on - strand, within SM_b20405 at 419.683 kb on + strand, within SM_b20405 at 419.683 kb on + strand, within SM_b20405 at 419.684 kb on - strand, within SM_b20405 at 419.684 kb on - strand, within SM_b20405 at 419.687 kb on + strand, within SM_b20405 at 419.687 kb on + strand, within SM_b20405 at 419.688 kb on - strand, within SM_b20405 at 419.762 kb on - strand, within SM_b20405 at 419.808 kb on - strand, within SM_b20405 at 419.901 kb on + strand at 419.901 kb on + strand at 419.966 kb on + strand at 419.966 kb on + strand at 419.966 kb on + strand at 419.966 kb on + strand at 419.967 kb on - strand at 419.967 kb on - strand at 419.997 kb on + strand at 419.998 kb on - strand at 420.168 kb on + strand at 420.212 kb on - strand at 420.335 kb on - strand, within SM_b20406 at 420.335 kb on - strand, within SM_b20406 at 420.335 kb on - strand, within SM_b20406 at 420.458 kb on - strand, within SM_b20406 at 420.552 kb on - strand, within SM_b20406 at 420.619 kb on + strand, within SM_b20406 at 420.619 kb on + strand, within SM_b20406 at 420.621 kb on + strand, within SM_b20406 at 420.621 kb on + strand, within SM_b20406 at 420.688 kb on + strand, within SM_b20406 at 420.723 kb on + strand, within SM_b20406 at 420.741 kb on + strand, within SM_b20406 at 420.741 kb on + strand, within SM_b20406 at 420.742 kb on - strand, within SM_b20406 at 420.866 kb on - strand, within SM_b20406 at 420.866 kb on - strand, within SM_b20406 at 420.888 kb on + strand, within SM_b20406 at 420.888 kb on + strand, within SM_b20406
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.05 mg/ml remove 418,162 - SM_b20404 0.58 +0.6 418,162 - SM_b20404 0.58 +0.5 418,320 - SM_b20404 0.65 -0.6 418,320 - SM_b20404 0.65 +0.0 418,320 - SM_b20404 0.65 +0.6 418,365 - SM_b20404 0.67 -0.7 418,384 + SM_b20404 0.68 -0.5 418,384 + SM_b20404 0.68 +0.4 418,385 - SM_b20404 0.68 +1.0 418,385 - SM_b20404 0.68 +0.5 418,464 + SM_b20404 0.72 -0.5 418,662 - SM_b20404 0.80 -0.8 418,837 - SM_b20404 0.88 +0.2 419,060 + +1.0 419,182 + -0.6 419,183 - +1.0 419,183 - +0.1 419,183 - -0.5 419,530 - SM_b20405 0.54 +0.2 419,581 + SM_b20405 0.60 +0.2 419,581 + SM_b20405 0.60 +0.3 419,676 + SM_b20405 0.72 +0.1 419,677 - SM_b20405 0.72 -1.4 419,680 + SM_b20405 0.73 +1.3 419,680 + SM_b20405 0.73 +0.3 419,680 + SM_b20405 0.73 +0.6 419,680 + SM_b20405 0.73 +2.3 419,681 - SM_b20405 0.73 +0.2 419,683 + SM_b20405 0.73 +1.5 419,683 + SM_b20405 0.73 -0.8 419,684 - SM_b20405 0.73 +0.2 419,684 - SM_b20405 0.73 +0.7 419,687 + SM_b20405 0.74 -0.1 419,687 + SM_b20405 0.74 -0.3 419,688 - SM_b20405 0.74 +0.1 419,762 - SM_b20405 0.83 +0.3 419,808 - SM_b20405 0.89 -0.4 419,901 + +0.3 419,901 + -0.5 419,966 + -0.3 419,966 + +0.2 419,966 + -0.9 419,966 + +1.1 419,967 - -0.4 419,967 - -0.3 419,997 + +0.4 419,998 - -0.4 420,168 + +0.1 420,212 - +0.2 420,335 - SM_b20406 0.15 -0.0 420,335 - SM_b20406 0.15 -0.6 420,335 - SM_b20406 0.15 -0.5 420,458 - SM_b20406 0.21 -1.1 420,552 - SM_b20406 0.25 +0.1 420,619 + SM_b20406 0.28 +0.1 420,619 + SM_b20406 0.28 +0.2 420,621 + SM_b20406 0.28 -1.4 420,621 + SM_b20406 0.28 -0.5 420,688 + SM_b20406 0.32 +0.1 420,723 + SM_b20406 0.33 +0.7 420,741 + SM_b20406 0.34 +0.5 420,741 + SM_b20406 0.34 +0.7 420,742 - SM_b20406 0.34 -1.6 420,866 - SM_b20406 0.40 -0.0 420,866 - SM_b20406 0.40 -0.0 420,888 + SM_b20406 0.41 +0.9 420,888 + SM_b20406 0.41 +1.5
Or see this region's nucleotide sequence