Experiment: Paraquat dichloride 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20358 and SM_b20359 are separated by 116 nucleotides SM_b20359 and SM_b20360 are separated by 40 nucleotides SM_b20360 and SM_b20361 are separated by 85 nucleotides
SM_b20358: SM_b20358 - regulatory protein, at 367,812 to 369,374
_b20358
SM_b20359: SM_b20359 - hypothetical protein, at 369,491 to 370,786
_b20359
SM_b20360: SM_b20360 - hypothetical protein, at 370,827 to 371,558
_b20360
SM_b20361: SM_b20361 - ionic voltage-gated channel protein, at 371,644 to 372,441
_b20361
Position (kb) 369
370
371 Strain fitness (log2 ratio) -2
-1
0
1 at 368.612 kb on - strand, within SM_b20358 at 368.644 kb on - strand, within SM_b20358 at 368.747 kb on - strand, within SM_b20358 at 368.949 kb on - strand, within SM_b20358 at 369.001 kb on + strand, within SM_b20358 at 369.001 kb on + strand, within SM_b20358 at 369.001 kb on + strand, within SM_b20358 at 369.002 kb on - strand, within SM_b20358 at 369.012 kb on + strand, within SM_b20358 at 369.012 kb on + strand, within SM_b20358 at 369.013 kb on - strand, within SM_b20358 at 369.013 kb on - strand, within SM_b20358 at 369.013 kb on - strand, within SM_b20358 at 369.013 kb on - strand, within SM_b20358 at 369.013 kb on - strand, within SM_b20358 at 369.013 kb on - strand, within SM_b20358 at 369.013 kb on - strand, within SM_b20358 at 369.013 kb on - strand, within SM_b20358 at 369.013 kb on - strand, within SM_b20358 at 369.013 kb on - strand, within SM_b20358 at 369.014 kb on + strand, within SM_b20358 at 369.014 kb on + strand, within SM_b20358 at 369.195 kb on + strand, within SM_b20358 at 369.223 kb on + strand at 369.224 kb on - strand at 369.260 kb on - strand at 369.360 kb on + strand at 369.360 kb on + strand at 369.361 kb on - strand at 369.590 kb on + strand at 369.590 kb on + strand at 369.590 kb on + strand at 369.590 kb on + strand at 369.591 kb on - strand at 369.591 kb on - strand at 369.592 kb on + strand at 369.592 kb on + strand at 369.593 kb on - strand at 369.593 kb on - strand at 369.593 kb on - strand at 369.593 kb on - strand at 369.701 kb on + strand, within SM_b20359 at 369.701 kb on + strand, within SM_b20359 at 369.872 kb on + strand, within SM_b20359 at 369.872 kb on + strand, within SM_b20359 at 369.873 kb on - strand, within SM_b20359 at 369.873 kb on - strand, within SM_b20359 at 370.023 kb on + strand, within SM_b20359 at 370.024 kb on - strand, within SM_b20359 at 370.078 kb on - strand, within SM_b20359 at 370.214 kb on - strand, within SM_b20359 at 370.694 kb on - strand at 370.694 kb on - strand at 370.695 kb on + strand at 370.696 kb on - strand at 370.696 kb on - strand at 370.696 kb on - strand at 371.063 kb on - strand, within SM_b20360 at 371.136 kb on + strand, within SM_b20360 at 371.136 kb on + strand, within SM_b20360 at 371.137 kb on - strand, within SM_b20360 at 371.481 kb on + strand, within SM_b20360 at 371.482 kb on - strand, within SM_b20360 at 371.485 kb on - strand at 371.538 kb on - strand at 371.556 kb on + strand at 371.590 kb on + strand at 371.590 kb on + strand at 371.590 kb on + strand at 371.591 kb on - strand at 371.663 kb on - strand at 371.753 kb on + strand, within SM_b20361 at 371.753 kb on + strand, within SM_b20361 at 371.753 kb on + strand, within SM_b20361
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.05 mg/ml remove 368,612 - SM_b20358 0.51 -0.2 368,644 - SM_b20358 0.53 -1.9 368,747 - SM_b20358 0.60 -0.1 368,949 - SM_b20358 0.73 +0.5 369,001 + SM_b20358 0.76 +0.5 369,001 + SM_b20358 0.76 -0.1 369,001 + SM_b20358 0.76 +0.4 369,002 - SM_b20358 0.76 +0.3 369,012 + SM_b20358 0.77 -1.6 369,012 + SM_b20358 0.77 +0.0 369,013 - SM_b20358 0.77 -2.4 369,013 - SM_b20358 0.77 +0.2 369,013 - SM_b20358 0.77 -1.0 369,013 - SM_b20358 0.77 -0.4 369,013 - SM_b20358 0.77 +0.7 369,013 - SM_b20358 0.77 +0.4 369,013 - SM_b20358 0.77 -0.7 369,013 - SM_b20358 0.77 -0.5 369,013 - SM_b20358 0.77 +0.0 369,013 - SM_b20358 0.77 -1.0 369,014 + SM_b20358 0.77 +0.9 369,014 + SM_b20358 0.77 +0.2 369,195 + SM_b20358 0.88 -0.4 369,223 + +0.1 369,224 - -0.2 369,260 - -0.3 369,360 + +0.7 369,360 + +0.5 369,361 - +0.2 369,590 + +0.0 369,590 + +0.3 369,590 + -0.8 369,590 + -0.1 369,591 - -1.0 369,591 - +1.1 369,592 + -0.8 369,592 + -0.0 369,593 - +0.5 369,593 - +0.2 369,593 - -2.0 369,593 - -0.8 369,701 + SM_b20359 0.16 -0.6 369,701 + SM_b20359 0.16 -1.3 369,872 + SM_b20359 0.29 +0.6 369,872 + SM_b20359 0.29 -0.5 369,873 - SM_b20359 0.29 +0.1 369,873 - SM_b20359 0.29 -0.7 370,023 + SM_b20359 0.41 -0.7 370,024 - SM_b20359 0.41 -0.4 370,078 - SM_b20359 0.45 +1.1 370,214 - SM_b20359 0.56 +0.6 370,694 - +0.1 370,694 - +0.5 370,695 + -0.5 370,696 - -0.6 370,696 - -0.6 370,696 - -0.1 371,063 - SM_b20360 0.32 -0.5 371,136 + SM_b20360 0.42 -0.4 371,136 + SM_b20360 0.42 -0.6 371,137 - SM_b20360 0.42 +0.7 371,481 + SM_b20360 0.89 -0.6 371,482 - SM_b20360 0.89 +0.1 371,485 - -2.3 371,538 - +0.0 371,556 + +0.2 371,590 + -1.0 371,590 + -0.2 371,590 + +0.3 371,591 - -0.1 371,663 - -1.2 371,753 + SM_b20361 0.14 +0.1 371,753 + SM_b20361 0.14 +0.1 371,753 + SM_b20361 0.14 +0.9
Or see this region's nucleotide sequence