Experiment: Paraquat dichloride 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20299 and SM_b20300 are separated by 336 nucleotides SM_b20300 and SM_b20301 overlap by 4 nucleotides
SM_b20299: SM_b20299 - N-acetylneuraminate lyase, at 305,696 to 306,595
_b20299
SM_b20300: SM_b20300 - adenylate cyclase, at 306,932 to 308,845
_b20300
SM_b20301: SM_b20301 - dehydgrogenase, at 308,842 to 309,972
_b20301
Position (kb) 306
307
308
309 Strain fitness (log2 ratio) -2
-1
0
1
2 at 306.017 kb on + strand, within SM_b20299 at 306.017 kb on + strand, within SM_b20299 at 306.021 kb on - strand, within SM_b20299 at 306.021 kb on - strand, within SM_b20299 at 306.096 kb on - strand, within SM_b20299 at 306.096 kb on - strand, within SM_b20299 at 306.097 kb on + strand, within SM_b20299 at 306.097 kb on + strand, within SM_b20299 at 306.098 kb on - strand, within SM_b20299 at 306.098 kb on - strand, within SM_b20299 at 306.181 kb on + strand, within SM_b20299 at 306.182 kb on - strand, within SM_b20299 at 306.182 kb on - strand, within SM_b20299 at 306.182 kb on - strand, within SM_b20299 at 306.242 kb on + strand, within SM_b20299 at 306.243 kb on - strand, within SM_b20299 at 306.243 kb on - strand, within SM_b20299 at 306.243 kb on - strand, within SM_b20299 at 306.312 kb on - strand, within SM_b20299 at 306.312 kb on - strand, within SM_b20299 at 306.314 kb on - strand, within SM_b20299 at 306.594 kb on - strand at 306.661 kb on - strand at 306.737 kb on + strand at 306.738 kb on - strand at 306.771 kb on + strand at 306.772 kb on - strand at 306.780 kb on - strand at 306.900 kb on - strand at 306.940 kb on + strand at 306.977 kb on + strand at 306.977 kb on + strand at 306.978 kb on - strand at 306.980 kb on - strand at 307.013 kb on + strand at 307.013 kb on + strand at 307.013 kb on + strand at 307.051 kb on - strand at 307.051 kb on - strand at 307.051 kb on - strand at 307.051 kb on - strand at 307.051 kb on - strand at 307.218 kb on + strand, within SM_b20300 at 307.218 kb on + strand, within SM_b20300 at 307.218 kb on + strand, within SM_b20300 at 307.218 kb on + strand, within SM_b20300 at 307.218 kb on + strand, within SM_b20300 at 307.219 kb on - strand, within SM_b20300 at 307.352 kb on + strand, within SM_b20300 at 307.545 kb on + strand, within SM_b20300 at 307.697 kb on - strand, within SM_b20300 at 307.697 kb on - strand, within SM_b20300 at 307.697 kb on - strand, within SM_b20300 at 307.699 kb on - strand, within SM_b20300 at 307.814 kb on + strand, within SM_b20300 at 307.815 kb on - strand, within SM_b20300 at 307.935 kb on + strand, within SM_b20300 at 307.935 kb on + strand, within SM_b20300 at 307.936 kb on - strand, within SM_b20300 at 307.936 kb on - strand, within SM_b20300 at 307.988 kb on + strand, within SM_b20300 at 307.988 kb on + strand, within SM_b20300 at 307.988 kb on + strand, within SM_b20300 at 307.988 kb on + strand, within SM_b20300 at 308.048 kb on + strand, within SM_b20300 at 308.048 kb on + strand, within SM_b20300 at 308.048 kb on + strand, within SM_b20300 at 308.079 kb on - strand, within SM_b20300 at 308.079 kb on - strand, within SM_b20300 at 308.192 kb on + strand, within SM_b20300 at 308.192 kb on + strand, within SM_b20300 at 308.193 kb on - strand, within SM_b20300 at 308.193 kb on - strand, within SM_b20300 at 308.193 kb on - strand, within SM_b20300 at 308.193 kb on - strand, within SM_b20300 at 308.507 kb on + strand, within SM_b20300 at 308.508 kb on - strand, within SM_b20300 at 308.510 kb on + strand, within SM_b20300 at 308.510 kb on + strand, within SM_b20300 at 308.510 kb on + strand, within SM_b20300 at 308.511 kb on - strand, within SM_b20300 at 308.511 kb on - strand, within SM_b20300 at 308.512 kb on + strand, within SM_b20300 at 308.512 kb on + strand, within SM_b20300 at 308.512 kb on + strand, within SM_b20300 at 308.512 kb on + strand, within SM_b20300 at 308.513 kb on - strand, within SM_b20300 at 308.513 kb on - strand, within SM_b20300 at 308.513 kb on - strand, within SM_b20300 at 308.516 kb on + strand, within SM_b20300 at 308.516 kb on + strand, within SM_b20300 at 308.516 kb on + strand, within SM_b20300 at 308.516 kb on + strand, within SM_b20300 at 308.538 kb on - strand, within SM_b20300 at 309.001 kb on - strand, within SM_b20301 at 309.007 kb on + strand, within SM_b20301 at 309.064 kb on - strand, within SM_b20301 at 309.065 kb on + strand, within SM_b20301 at 309.065 kb on + strand, within SM_b20301 at 309.065 kb on + strand, within SM_b20301 at 309.066 kb on - strand, within SM_b20301 at 309.066 kb on - strand, within SM_b20301 at 309.105 kb on + strand, within SM_b20301 at 309.162 kb on + strand, within SM_b20301 at 309.163 kb on - strand, within SM_b20301 at 309.164 kb on + strand, within SM_b20301 at 309.197 kb on + strand, within SM_b20301 at 309.218 kb on - strand, within SM_b20301 at 309.314 kb on + strand, within SM_b20301 at 309.315 kb on - strand, within SM_b20301 at 309.315 kb on - strand, within SM_b20301 at 309.463 kb on + strand, within SM_b20301 at 309.463 kb on + strand, within SM_b20301 at 309.463 kb on + strand, within SM_b20301 at 309.464 kb on - strand, within SM_b20301 at 309.638 kb on + strand, within SM_b20301 at 309.639 kb on - strand, within SM_b20301
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.05 mg/ml remove 306,017 + SM_b20299 0.36 -0.4 306,017 + SM_b20299 0.36 +0.9 306,021 - SM_b20299 0.36 +0.3 306,021 - SM_b20299 0.36 -0.3 306,096 - SM_b20299 0.44 -0.0 306,096 - SM_b20299 0.44 -0.9 306,097 + SM_b20299 0.45 +0.9 306,097 + SM_b20299 0.45 +0.7 306,098 - SM_b20299 0.45 +0.4 306,098 - SM_b20299 0.45 -0.8 306,181 + SM_b20299 0.54 -0.4 306,182 - SM_b20299 0.54 -0.3 306,182 - SM_b20299 0.54 -0.2 306,182 - SM_b20299 0.54 -0.5 306,242 + SM_b20299 0.61 +0.9 306,243 - SM_b20299 0.61 -1.8 306,243 - SM_b20299 0.61 -0.5 306,243 - SM_b20299 0.61 -0.2 306,312 - SM_b20299 0.68 +0.7 306,312 - SM_b20299 0.68 +0.0 306,314 - SM_b20299 0.69 -0.7 306,594 - +0.7 306,661 - +0.1 306,737 + -0.5 306,738 - +0.2 306,771 + +0.8 306,772 - +0.1 306,780 - +0.6 306,900 - +0.6 306,940 + -0.5 306,977 + -0.3 306,977 + -0.5 306,978 - +0.4 306,980 - +0.8 307,013 + +0.2 307,013 + -0.4 307,013 + -2.7 307,051 - -0.4 307,051 - -0.6 307,051 - -0.3 307,051 - +0.6 307,051 - -0.2 307,218 + SM_b20300 0.15 +0.2 307,218 + SM_b20300 0.15 -0.2 307,218 + SM_b20300 0.15 +0.6 307,218 + SM_b20300 0.15 +0.3 307,218 + SM_b20300 0.15 -0.8 307,219 - SM_b20300 0.15 -0.3 307,352 + SM_b20300 0.22 -0.3 307,545 + SM_b20300 0.32 -0.1 307,697 - SM_b20300 0.40 -0.9 307,697 - SM_b20300 0.40 +1.2 307,697 - SM_b20300 0.40 -0.2 307,699 - SM_b20300 0.40 +0.5 307,814 + SM_b20300 0.46 -0.4 307,815 - SM_b20300 0.46 +0.5 307,935 + SM_b20300 0.52 +0.2 307,935 + SM_b20300 0.52 -0.1 307,936 - SM_b20300 0.52 -2.2 307,936 - SM_b20300 0.52 +0.1 307,988 + SM_b20300 0.55 +0.8 307,988 + SM_b20300 0.55 -0.9 307,988 + SM_b20300 0.55 -0.2 307,988 + SM_b20300 0.55 +0.7 308,048 + SM_b20300 0.58 +0.3 308,048 + SM_b20300 0.58 -0.0 308,048 + SM_b20300 0.58 -0.4 308,079 - SM_b20300 0.60 -0.0 308,079 - SM_b20300 0.60 +1.1 308,192 + SM_b20300 0.66 +2.3 308,192 + SM_b20300 0.66 -0.1 308,193 - SM_b20300 0.66 -0.1 308,193 - SM_b20300 0.66 -0.0 308,193 - SM_b20300 0.66 +0.9 308,193 - SM_b20300 0.66 -0.5 308,507 + SM_b20300 0.82 +0.2 308,508 - SM_b20300 0.82 +0.2 308,510 + SM_b20300 0.82 -0.1 308,510 + SM_b20300 0.82 +0.1 308,510 + SM_b20300 0.82 -0.0 308,511 - SM_b20300 0.82 -1.4 308,511 - SM_b20300 0.82 -0.2 308,512 + SM_b20300 0.83 -0.5 308,512 + SM_b20300 0.83 +1.0 308,512 + SM_b20300 0.83 +0.3 308,512 + SM_b20300 0.83 -0.5 308,513 - SM_b20300 0.83 +1.0 308,513 - SM_b20300 0.83 +0.2 308,513 - SM_b20300 0.83 +1.1 308,516 + SM_b20300 0.83 -0.7 308,516 + SM_b20300 0.83 -1.5 308,516 + SM_b20300 0.83 -0.9 308,516 + SM_b20300 0.83 +0.4 308,538 - SM_b20300 0.84 -1.8 309,001 - SM_b20301 0.14 +0.2 309,007 + SM_b20301 0.15 -0.3 309,064 - SM_b20301 0.20 +0.4 309,065 + SM_b20301 0.20 +0.2 309,065 + SM_b20301 0.20 +0.0 309,065 + SM_b20301 0.20 -0.1 309,066 - SM_b20301 0.20 +0.4 309,066 - SM_b20301 0.20 +0.4 309,105 + SM_b20301 0.23 -0.4 309,162 + SM_b20301 0.28 -0.4 309,163 - SM_b20301 0.28 +0.4 309,164 + SM_b20301 0.28 -0.6 309,197 + SM_b20301 0.31 -0.2 309,218 - SM_b20301 0.33 -1.2 309,314 + SM_b20301 0.42 -1.5 309,315 - SM_b20301 0.42 +0.0 309,315 - SM_b20301 0.42 -1.7 309,463 + SM_b20301 0.55 -0.2 309,463 + SM_b20301 0.55 -0.2 309,463 + SM_b20301 0.55 +0.3 309,464 - SM_b20301 0.55 -0.1 309,638 + SM_b20301 0.70 -1.7 309,639 - SM_b20301 0.70 +0.3
Or see this region's nucleotide sequence