Experiment: Paraquat dichloride 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20252 and SM_b20253 are separated by 46 nucleotides SM_b20253 and SM_b20254 are separated by 208 nucleotides SM_b20254 and SM_b20255 are separated by 74 nucleotides
SM_b20252: SM_b20252 - hypothetical protein, at 257,884 to 259,248
_b20252
SM_b20253: SM_b20253 - hypothetical protein, at 259,295 to 260,200
_b20253
SM_b20254: SM_b20254 - hypothetical protein, at 260,409 to 260,684
_b20254
SM_b20255: SM_b20255 - hypothetical protein, at 260,759 to 261,310
_b20255
Position (kb) 259
260
261 Strain fitness (log2 ratio) -2
-1
0
1 at 258.527 kb on + strand, within SM_b20252 at 258.749 kb on + strand, within SM_b20252 at 258.806 kb on + strand, within SM_b20252 at 258.858 kb on - strand, within SM_b20252 at 258.895 kb on + strand, within SM_b20252 at 258.895 kb on + strand, within SM_b20252 at 258.895 kb on + strand, within SM_b20252 at 258.895 kb on + strand, within SM_b20252 at 258.895 kb on + strand, within SM_b20252 at 258.895 kb on + strand, within SM_b20252 at 258.895 kb on + strand, within SM_b20252 at 258.895 kb on + strand, within SM_b20252 at 258.895 kb on + strand, within SM_b20252 at 258.896 kb on - strand, within SM_b20252 at 258.896 kb on - strand, within SM_b20252 at 258.896 kb on - strand, within SM_b20252 at 259.010 kb on + strand, within SM_b20252 at 259.010 kb on + strand, within SM_b20252 at 259.010 kb on + strand, within SM_b20252 at 259.011 kb on - strand, within SM_b20252 at 259.011 kb on - strand, within SM_b20252 at 259.011 kb on - strand, within SM_b20252 at 259.043 kb on + strand, within SM_b20252 at 259.317 kb on + strand at 259.317 kb on + strand at 259.479 kb on + strand, within SM_b20253 at 259.640 kb on + strand, within SM_b20253 at 259.640 kb on + strand, within SM_b20253 at 259.640 kb on + strand, within SM_b20253 at 259.640 kb on + strand, within SM_b20253 at 259.640 kb on + strand, within SM_b20253 at 259.640 kb on + strand, within SM_b20253 at 259.640 kb on + strand, within SM_b20253 at 259.641 kb on - strand, within SM_b20253 at 259.641 kb on - strand, within SM_b20253 at 259.641 kb on - strand, within SM_b20253 at 259.719 kb on + strand, within SM_b20253 at 259.719 kb on + strand, within SM_b20253 at 259.727 kb on + strand, within SM_b20253 at 259.727 kb on + strand, within SM_b20253 at 259.729 kb on + strand, within SM_b20253 at 259.730 kb on - strand, within SM_b20253 at 259.730 kb on - strand, within SM_b20253 at 259.730 kb on - strand, within SM_b20253 at 259.732 kb on - strand, within SM_b20253 at 259.751 kb on - strand, within SM_b20253 at 259.899 kb on + strand, within SM_b20253 at 259.900 kb on - strand, within SM_b20253 at 259.900 kb on - strand, within SM_b20253 at 259.948 kb on - strand, within SM_b20253 at 260.053 kb on + strand, within SM_b20253 at 260.152 kb on - strand at 260.200 kb on + strand at 260.316 kb on + strand at 260.317 kb on - strand at 260.367 kb on + strand at 260.368 kb on - strand at 260.760 kb on + strand at 260.760 kb on + strand at 260.760 kb on + strand at 260.879 kb on + strand, within SM_b20255 at 260.879 kb on + strand, within SM_b20255 at 260.879 kb on + strand, within SM_b20255 at 261.071 kb on + strand, within SM_b20255 at 261.071 kb on + strand, within SM_b20255
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.05 mg/ml remove 258,527 + SM_b20252 0.47 +0.1 258,749 + SM_b20252 0.63 +0.0 258,806 + SM_b20252 0.68 +1.0 258,858 - SM_b20252 0.71 -0.6 258,895 + SM_b20252 0.74 +0.1 258,895 + SM_b20252 0.74 -0.9 258,895 + SM_b20252 0.74 -0.4 258,895 + SM_b20252 0.74 -0.2 258,895 + SM_b20252 0.74 +0.2 258,895 + SM_b20252 0.74 -0.3 258,895 + SM_b20252 0.74 -1.5 258,895 + SM_b20252 0.74 -0.1 258,895 + SM_b20252 0.74 -0.1 258,896 - SM_b20252 0.74 -0.2 258,896 - SM_b20252 0.74 -2.2 258,896 - SM_b20252 0.74 -1.9 259,010 + SM_b20252 0.82 -0.1 259,010 + SM_b20252 0.82 +0.7 259,010 + SM_b20252 0.82 -0.2 259,011 - SM_b20252 0.83 +0.0 259,011 - SM_b20252 0.83 -0.2 259,011 - SM_b20252 0.83 +0.1 259,043 + SM_b20252 0.85 -0.2 259,317 + +1.1 259,317 + -0.2 259,479 + SM_b20253 0.20 -0.2 259,640 + SM_b20253 0.38 +0.4 259,640 + SM_b20253 0.38 -0.4 259,640 + SM_b20253 0.38 -0.7 259,640 + SM_b20253 0.38 -0.6 259,640 + SM_b20253 0.38 -0.7 259,640 + SM_b20253 0.38 +0.1 259,640 + SM_b20253 0.38 +0.0 259,641 - SM_b20253 0.38 -0.9 259,641 - SM_b20253 0.38 -0.2 259,641 - SM_b20253 0.38 -0.3 259,719 + SM_b20253 0.47 +0.2 259,719 + SM_b20253 0.47 -0.3 259,727 + SM_b20253 0.48 -1.0 259,727 + SM_b20253 0.48 -0.2 259,729 + SM_b20253 0.48 -0.5 259,730 - SM_b20253 0.48 +0.1 259,730 - SM_b20253 0.48 -0.8 259,730 - SM_b20253 0.48 +0.3 259,732 - SM_b20253 0.48 +0.5 259,751 - SM_b20253 0.50 +0.0 259,899 + SM_b20253 0.67 -0.1 259,900 - SM_b20253 0.67 +0.5 259,900 - SM_b20253 0.67 -1.3 259,948 - SM_b20253 0.72 -0.9 260,053 + SM_b20253 0.84 -1.4 260,152 - -0.7 260,200 + +0.9 260,316 + +0.9 260,317 - +0.7 260,367 + +0.2 260,368 - -0.1 260,760 + +0.2 260,760 + +0.0 260,760 + +0.3 260,879 + SM_b20255 0.22 -0.1 260,879 + SM_b20255 0.22 -0.4 260,879 + SM_b20255 0.22 +0.7 261,071 + SM_b20255 0.57 +0.9 261,071 + SM_b20255 0.57 +0.1
Or see this region's nucleotide sequence