Experiment: Paraquat dichloride 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20165 and SM_b20166 overlap by 4 nucleotides SM_b20166 and SM_b20167 are separated by 73 nucleotides SM_b20167 and SM_b20168 are separated by 134 nucleotides
SM_b20165: SM_b20165 - hypothetical protein, at 184,327 to 184,998
_b20165
SM_b20166: SM_b20166 - hypothetical protein, at 184,995 to 185,348
_b20166
SM_b20167: SM_b20167 - hypothetical protein, at 185,422 to 186,234
_b20167
SM_b20168: SM_b20168 - hypothetical protein, at 186,369 to 187,466
_b20168
Position (kb) 185
186
187 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 184.484 kb on - strand, within SM_b20165 at 184.484 kb on - strand, within SM_b20165 at 184.576 kb on + strand, within SM_b20165 at 184.577 kb on - strand, within SM_b20165 at 184.609 kb on + strand, within SM_b20165 at 184.610 kb on - strand, within SM_b20165 at 184.699 kb on + strand, within SM_b20165 at 184.699 kb on + strand, within SM_b20165 at 184.699 kb on + strand, within SM_b20165 at 184.699 kb on + strand, within SM_b20165 at 184.897 kb on + strand, within SM_b20165 at 184.900 kb on + strand, within SM_b20165 at 184.900 kb on + strand, within SM_b20165 at 185.106 kb on + strand, within SM_b20166 at 185.106 kb on + strand, within SM_b20166 at 185.106 kb on + strand, within SM_b20166 at 185.149 kb on + strand, within SM_b20166 at 185.208 kb on + strand, within SM_b20166 at 185.208 kb on + strand, within SM_b20166 at 185.208 kb on + strand, within SM_b20166 at 185.209 kb on - strand, within SM_b20166 at 185.209 kb on - strand, within SM_b20166 at 185.346 kb on + strand at 185.472 kb on + strand at 185.517 kb on - strand, within SM_b20167 at 185.517 kb on - strand, within SM_b20167 at 185.517 kb on - strand, within SM_b20167 at 185.517 kb on - strand, within SM_b20167 at 185.517 kb on - strand, within SM_b20167 at 185.663 kb on + strand, within SM_b20167 at 185.664 kb on - strand, within SM_b20167 at 185.664 kb on - strand, within SM_b20167 at 185.711 kb on - strand, within SM_b20167 at 186.151 kb on + strand, within SM_b20167 at 186.213 kb on + strand at 186.269 kb on - strand at 186.273 kb on + strand at 186.273 kb on + strand at 186.273 kb on + strand at 186.273 kb on + strand at 186.274 kb on - strand at 186.274 kb on - strand at 186.274 kb on - strand at 186.274 kb on - strand at 186.275 kb on + strand at 186.275 kb on + strand at 186.276 kb on - strand at 186.276 kb on - strand at 186.276 kb on - strand at 186.276 kb on - strand at 186.276 kb on - strand at 186.280 kb on + strand at 186.280 kb on + strand at 186.280 kb on + strand at 186.281 kb on - strand at 186.281 kb on - strand at 186.281 kb on - strand at 186.319 kb on + strand at 186.320 kb on - strand at 186.354 kb on + strand at 186.550 kb on + strand, within SM_b20168 at 186.550 kb on + strand, within SM_b20168 at 186.551 kb on - strand, within SM_b20168 at 186.551 kb on - strand, within SM_b20168 at 186.716 kb on - strand, within SM_b20168 at 186.777 kb on + strand, within SM_b20168 at 186.777 kb on + strand, within SM_b20168 at 186.778 kb on - strand, within SM_b20168 at 186.833 kb on + strand, within SM_b20168 at 186.833 kb on + strand, within SM_b20168 at 186.834 kb on - strand, within SM_b20168 at 186.834 kb on - strand, within SM_b20168 at 186.939 kb on + strand, within SM_b20168
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.05 mg/ml remove 184,484 - SM_b20165 0.23 +3.8 184,484 - SM_b20165 0.23 +0.1 184,576 + SM_b20165 0.37 -0.4 184,577 - SM_b20165 0.37 +0.6 184,609 + SM_b20165 0.42 -0.6 184,610 - SM_b20165 0.42 -1.2 184,699 + SM_b20165 0.55 +0.1 184,699 + SM_b20165 0.55 +0.4 184,699 + SM_b20165 0.55 -0.1 184,699 + SM_b20165 0.55 +0.6 184,897 + SM_b20165 0.85 -1.0 184,900 + SM_b20165 0.85 -1.1 184,900 + SM_b20165 0.85 -0.2 185,106 + SM_b20166 0.31 -0.3 185,106 + SM_b20166 0.31 +0.3 185,106 + SM_b20166 0.31 +1.2 185,149 + SM_b20166 0.44 -0.1 185,208 + SM_b20166 0.60 +0.1 185,208 + SM_b20166 0.60 +0.6 185,208 + SM_b20166 0.60 +0.4 185,209 - SM_b20166 0.60 +2.0 185,209 - SM_b20166 0.60 +0.4 185,346 + -0.3 185,472 + +0.4 185,517 - SM_b20167 0.12 -0.2 185,517 - SM_b20167 0.12 +0.3 185,517 - SM_b20167 0.12 +0.3 185,517 - SM_b20167 0.12 +0.9 185,517 - SM_b20167 0.12 +1.4 185,663 + SM_b20167 0.30 -0.1 185,664 - SM_b20167 0.30 +0.1 185,664 - SM_b20167 0.30 +0.5 185,711 - SM_b20167 0.36 -0.3 186,151 + SM_b20167 0.90 +0.4 186,213 + -0.7 186,269 - +3.4 186,273 + -0.3 186,273 + -0.2 186,273 + -0.5 186,273 + +0.1 186,274 - +1.6 186,274 - -0.2 186,274 - -0.5 186,274 - +0.1 186,275 + +0.1 186,275 + +1.4 186,276 - -0.0 186,276 - -0.3 186,276 - -0.1 186,276 - -0.3 186,276 - +0.1 186,280 + -1.0 186,280 + +0.1 186,280 + -0.2 186,281 - -0.2 186,281 - -0.5 186,281 - -0.0 186,319 + -0.6 186,320 - +0.0 186,354 + -0.5 186,550 + SM_b20168 0.16 -1.0 186,550 + SM_b20168 0.16 -0.7 186,551 - SM_b20168 0.17 +1.5 186,551 - SM_b20168 0.17 +0.7 186,716 - SM_b20168 0.32 -0.6 186,777 + SM_b20168 0.37 +0.6 186,777 + SM_b20168 0.37 -0.2 186,778 - SM_b20168 0.37 -1.3 186,833 + SM_b20168 0.42 -0.2 186,833 + SM_b20168 0.42 -0.5 186,834 - SM_b20168 0.42 +0.7 186,834 - SM_b20168 0.42 +0.8 186,939 + SM_b20168 0.52 +0.3
Or see this region's nucleotide sequence